Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1410 ATGATGGCGGTGAGTTCTTCCTGCAAAGATGGGAGCAAGGTGGCAATGGACAACGGCAAGTATGTTCGCTACACACCCGAGCAGGTGGAAGCCCTCGAGAGGCTTTATCACGAATGCCCCAAACCCAGTTCCATGCGCCGCCAGCAGCTGATTAGAGAGTGTCCCATTCTCTCCCACATCGAGCCGAAGCAGATCAAGGTTTGGTTCCAGAATCGAAGATGCAGAGAGAAACAGCGAAAAGAATCGTCACGCCTGCAAGCTGTGAACAGGAAGCTGACGGCGATGAATAAACTGCTGATGGAGGAAAATGAGAGATTGCAGAAGCAAGTGTCGCAGCTGGTTTATGAGAACAGCTTCTTCCGCCAACAGACACAGAATCGGACGAACCTTGCTACCGCGGACACAAGTTGTGAGTCGGTGGTAACCAGCGGTCAGCACCGCTTGACATCTCAGCATCCACCAAAGGATGCCAGCCCTGCTGGACTTTTGTCCATAGCAGAGGAGACCTTAGCAGAGTTTCTTTCGAAGGCCACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATAGGAATCGTTGCTATTTCTCATGATTGCCCGGGAGTGGCAGCACGAGCCTGTGGCCTTGTGGGTCTGGAACCTATGAGGGTTGCTGAAATCCTCAAAGATAGGCCCTCATGGTTTCGTGATTGCCGAGCTGTGGATGTTCTGAATGTGATGTCCACTGGAAATGGGGGAACCATTGAACTGCTTTATATGCAGTTATATGCGCCAACAACTTTGGCACCAGCTCGTGACTTCTGGTTGCTGCGCTACACATCTCTTTTGGAGGACGGTAGTTTAGTGGTATGTGAAAGATCTCTTAACAATACTCAGAATGGACCCACAGTGCCGCCAGTACAAAATTTTGTTAGAGCAGAAATGCTGCCAAGCGGCTATCTGATTAGACCTTGTGAAGGAGGTGGATCCATTATTCATATTGTTGATCACATGGATTTAGAGGCTTTACGTCATCTGAGGCAGATTTCTCAAGAAGTTTCTCAGCCTAATGTCTCAGGATGGGGAAGAAGGCCTGCAGCTCTACGTGCACTTAGTCAGCGGTTGAGCAAGGGATTCAACGAAGCTGTCAATGGTTTTGCAGACGATGGCTGGTCCATGTTAGAAAGTGACGGCATTGATGATGTCACCCTTCTTGTGAATTCTTCTCCTACCAAGATGATGGGACTAAATCTTGGTCATAGCAGTGGATTTCCTTCTATGAGCAGCTCTGTGCTTTGTGCCAGAGCATCAATGTTGCTACAGAATGTCCCTCCTGCAATTCTTCTTCGATTCTTGCGGGAGCACCGATCCGAGTGGGCAGATAGCAGTATTGATGCTTACTCTGCCGCTGCCATTAAAGCTGGTCCCTGTAGCATGCCAGCCGCCCGAGTGGGAGGTTTTGGGGGTCAGGTTATTCTTCCACTGGCTCATACTATTGAGCATGAAGAGTTCATGGAAGTAATTAAGCTTGAAAACATGGGTTACTATAGCGACGACATGACTATACCCGGCGATATTTTCCTCTTGCAACTTGGTAGTGGAGCGGATGAGCATGCAGTTGGCAGCTGTGCAGAACTCGTTTTTGCTCCCATTGACGCATCTTTCTCCGATGATGCACCCATTTTACCTTCTGGTTTTCGCATTATACCTCTTGATTCTAACATGGATGCTGTTAGTCCAAACCGTACACTCGATCTTGCTGCCTCACTTGAAGATAAAACCACAGGAAATAAAGGAGGTGGCGACAATTCTGGTAATTCGAGGAGCACAAAATCTGTGATGACAATAGCATTCCAGTTTGCATTTGAAGTCCACCTTCAGGATAATGTAGCCTCTATGGCCCGGCAGTACGTCCGCAGTATTATTGCATCCGTTCAGAGGGTTGCATTAGCCCTCTCCCCTTTGCATTTTGGTTCTCAAAATGGTTTTCGCCTACCACCTGGTACTCCCGAGGCACAAACACTTGCTCGGTGGGTCTGTCAAAGCTACAGATGCTATCTAGGTGTAGAACTGCTAAAATGTGAAGGCAGTGAATCCATTCTCAAATCCCTTTGGCATCACTCAGATGCGGTCATGTGCTGCTCTTTAAAGGCATTGCCCGTTTTTACATTTGCAAATCAAGCTGGACTTGACATGCTTGAGACAACCTTGGTTGCTCTTCAAGACATAACTCTGGAAAGAATTTTTGACGACAACGGAAAGAAAACCCTGTGCTCTGAGTTCCCTCATATAATGCAGCAGGGTTTTATGTGTATTCAAGGTGGTATCTGCTTATCCAGCATGGGGAGGCCTGTATCCTACGAGAGAGCAGTGGCATGGAAAGTCCTGAACGATGAAGAAACGCCTCATTGCATCTGTTTCATGTTCATCAACTGGTCTTTTGTCTGA 2448 0.4808 MMAVSSSCKDGSKVAMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNKLLMEENERLQKQVSQLVYENSFFRQQTQNRTNLATADTSCESVVTSGQHRLTSQHPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHDCPGVAARACGLVGLEPMRVAEILKDRPSWFRDCRAVDVLNVMSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSLLEDGSLVVCERSLNNTQNGPTVPPVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEALRHLRQISQEVSQPNVSGWGRRPAALRALSQRLSKGFNEAVNGFADDGWSMLESDGIDDVTLLVNSSPTKMMGLNLGHSSGFPSMSSSVLCARASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCSMPAARVGGFGGQVILPLAHTIEHEEFMEVIKLENMGYYSDDMTIPGDIFLLQLGSGADEHAVGSCAELVFAPIDASFSDDAPILPSGFRIIPLDSNMDAVSPNRTLDLAASLEDKTTGNKGGGDNSGNSRSTKSVMTIAFQFAFEVHLQDNVASMARQYVRSIIASVQRVALALSPLHFGSQNGFRLPPGTPEAQTLARWVCQSYRCYLGVELLKCEGSESILKSLWHHSDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLERIFDDNGKKTLCSEFPHIMQQGFMCIQGGICLSSMGRPVSYERAVAWKVLNDEETPHCICFMFINWSFV 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1410 815 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
Glsi08g1410 815 FunFam Homeobox-leucine zipper protein REVOLUTA 20 75 - -
Glsi08g1410 815 CDD START_ArGLABRA2_like 159 341 - -
Glsi08g1410 815 CDD bZIP 72 111 - -
Glsi08g1410 815 ProSiteProfiles START domain profile. 155 341 IPR002913 GO:0008289
Glsi08g1410 815 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 16 815 IPR044830 GO:0003700
Glsi08g1410 815 Pfam Homeodomain 20 78 IPR001356 GO:0003677
Glsi08g1410 815 SUPERFAMILY Homeodomain-like 19 81 IPR009057 -
Glsi08g1410 815 Coils Coil 85 116 - -
Glsi08g1410 815 Gene3D - 199 356 IPR023393 -
Glsi08g1410 815 SUPERFAMILY Bet v1-like 164 349 - -
Glsi08g1410 815 Pfam MEKHLA domain 674 814 IPR013978 -
Glsi08g1410 815 SMART HOX_1 17 83 IPR001356 GO:0003677
Glsi08g1410 815 Pfam START domain 165 342 IPR002913 GO:0008289
Glsi08g1410 815 CDD homeodomain 20 80 IPR001356 GO:0003677
Glsi08g1410 815 MobiDBLite consensus disorder prediction 589 608 - -
Glsi08g1410 815 SMART START_1 164 374 IPR002913 GO:0008289
Glsi08g1410 815 Gene3D - 11 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1410 Glsi-ChrGlsi08 10294848 10301232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1410 16 815 Homeobox Transcription Factor Family AT4G32880 77.778 0.0 1342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi08g1410 START 6.6e-45 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1410 08 10294848 10301232 Glsi08g1410 08 10294848 10301232 ECH