Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1408 ATGGCCAGAGGAGTTCAAACGTTTCCAAAGTCGATCACGTTTATGTGCCTCGTCATGTTCGTGTTCAACCTTCACTCATCACATGGGGATGAACTTGAGCTTCTGTTAGCCTTCAAAGCTTCAATCAACGACCCACTTCACTTGCTTTCCAACTGGGTTAGTTCCTCTTCTACTATCTGCAACTGGTATGGAGTCACCTGCGACAACTCCTCTAATGTTAACGCCATCGAGCTCTCTGGGAAAAACATCTCCGGCATGATATCCTCGTCCATATTTCAACTGCCAAATGTTAAACATATCGACATCTCAAACAATCAGTTGGCTGGGCAGGTTGCTGTAAAGTCTCCTTCGTCTCTCTCTTCACTTCGTTACCTCAATCTCAGCAACAACAATCTAACTGGTTCGCTACCAAAGAGTTTATTTTCCATGTCGTTTTCCGACCTCCAAACCCTGGATCTCTCAAACAACATGTTTTCCGGTAAAGTACCAGATGAAGTTGGATTGCTTTCCAGTCTAAGGTATCTTGATCTGGGAGGAAACGTTTTGGTGGGAAAAATTCCAAATTCCATCACCAACTTGACAAGTTTGCAATACTTGACGTTGGCTTCGAACCAGTTAGTGGGTCAAGTCCCACAAGAAGTAGGTCTAATGAAGAGCTTGAAGTGGATTTACTTTGGATACAACAACCTCTCAGGTGAGGTTCCAATGGGCATTGGAGAATTAGTCTCTTTGAATCATCTTGATCTTGTTTACAACAATTTCACAGGACAAATTCCCGAGACCCTCGGAAACCTCACTAATCTTCAGTATCTCTTCCTCTACCGAAACAAACTTATAGGTCCAATTCCCCGATCCATTTTCGAGCTAAAAAACCTTATTTCGCTTGATCTCAGCGATAATTCTCTTTCGGGTGAGATTTCTGAGCTTGTGATTCAGCTCCAGAGATTAGAGATTCTTCACCTTTTCTCGAACAACTTTACCGGACAGATTCCAAGCGCTTTAACCTCTTTACCTCGCCTTCAAGTTCTCCAGCTATGGTCCAACAGATTAACTGGTGAAATTCCAAAAGAGCTGGGAAAGCATAACAACCTCACCGTTTTGGACCTTTCAACCAACCACCTTTCCGGGGAGATTCCAGATAGTTTATGTGACTCGGGCAGTCTTTACAAGCTTATCCTGTTCTCTAACTTTCTGGAAGGACAAGTCCCAAGTAACTTAAGCTCTTGCAGAAGCTTACGCAGAGTACGTCTCCAAAACAACAAGCTTTCCGGGGAATTGCCATCAGAATTAACCAAACTGCCTCAGATATACTTGTTGGACATCTCTGGCAATGAACTTTCTGGGAGGATCGATGACAGGAAGTGGGATATGCCGGCACTTCAAATGCTGAATTTGGCTAAAAACAACTTGGCGGGGAAGTTACCAAACTCTTTTGGGAGTAACAAACTCGAGAACTTGGACTTATCGGAGAATAACTTTTCAGGTTATATTCCAGCAGGGCTTGGGAGCTTATCAGAGCTCATGCAACTGAAGCTAAGTAATAACAGGATCTCCGGTAATATCCCGAATGAACTTTCTTCATGCAAAAAGCTTGTGGCTTTAGACCTCAGTCACAACCAACTTAGCGGGCAACTACCAACCAGTCTTGGCGAGATGCCTGTTCTTGGCCAGCTTGATGTGTCAGAAAACCAATTGTCCGGTAAAATTCCCCACAACTTAGGAAGCGTGGAATCTCTTGTTGAGGTGAACATATCCCACAACCATTTTCATGGAACTTTACCGTCCACAGCAGCTTTTCTTGCCATTAATGCGAGTGCAGTCACTGGAAACCACCTTTGTGACAGTGACACTGATAGCACGAGCGGGTTGGCACCATGCGAAACAGATAGGAATCCAACTTGGTGGTTTGTTATATTATGTTTTCTGGCAGGATTAGCCGCATTTGCGTTGGGTGCTTTTCTCATTTTTTACGTGCGTAGGAGAAAGAGTTTGGAGGTGCGAAGGGTGGAAAATGAAGATGGCACTTGGGAAATGCAGTATTTTAACTCCGAGACTTGGAAACTGATCACTATCGACGATGTTTTCTGTTCGGCAAAAGAAAGAAATGTCATTTCCAAAGGAAGAAACTGGATTTCATACGAAGGGAAGTGCATGGCAAATGACATGCAATTCGAAGTGAAAGAGATAAGTGACCTAAATTCAGTTCCTTTGAATTTTTGGGAAGACATGGTGGAGATCGGTAAGCTCCGACATCCGAACATCGTTAAGTTGATAGGAATATGCAGGTCCGGTAAGGGAGGGTACTTGGTGTACGAGTATGCCGAGGGAAAGAGTTTAAGCCAAGTTGTAAGAAATTTGAGCTGGGAACGTCGGCGGAAAATTGCGGTTGGAATTGCAAAAGCACTAAAGTTTTTGCATGCTCATTGTTCACCTGTTGTTTTGGTGGGTGAGATGTCACCTGAGAGAGTTTTGGTGGACGGAAGAGATGTTCCTCGTCTCAAGTTAAGCCCTCCGGGAACTATATGTACGGATGTCAAGGGTTCCATTTCGTCAGACTACGTTTCTCCAGAAGCAAGAAATAGCAAAGAGGTCACAGGGAAGAGTGACATATACGGATTCGGCCTTATTCTGATCGAATTATTGACCGGAAGAAGTCCGATGGACGCGGAAGTGGGCATGCAAGGGAGCATTGTAGAGTGGGCCCGCTATTGCTATTCGGATTGTCATTTGGACATGTGGATCGACCCGATGATGAAGGGTGGGTTTGCATCGATCACTCGCGACAACATCGTTCGGACTATGGACCTCGCCCTTCACTGCACCGCCACTGATCCCACGGCAAGGCCATGCGCAAGCCACGTACTCAAAGCCCTGCGCGCTGTTACCACCTGA 2892 0.4502 MARGVQTFPKSITFMCLVMFVFNLHSSHGDELELLLAFKASINDPLHLLSNWVSSSSTICNWYGVTCDNSSNVNAIELSGKNISGMISSSIFQLPNVKHIDISNNQLAGQVAVKSPSSLSSLRYLNLSNNNLTGSLPKSLFSMSFSDLQTLDLSNNMFSGKVPDEVGLLSSLRYLDLGGNVLVGKIPNSITNLTSLQYLTLASNQLVGQVPQEVGLMKSLKWIYFGYNNLSGEVPMGIGELVSLNHLDLVYNNFTGQIPETLGNLTNLQYLFLYRNKLIGPIPRSIFELKNLISLDLSDNSLSGEISELVIQLQRLEILHLFSNNFTGQIPSALTSLPRLQVLQLWSNRLTGEIPKELGKHNNLTVLDLSTNHLSGEIPDSLCDSGSLYKLILFSNFLEGQVPSNLSSCRSLRRVRLQNNKLSGELPSELTKLPQIYLLDISGNELSGRIDDRKWDMPALQMLNLAKNNLAGKLPNSFGSNKLENLDLSENNFSGYIPAGLGSLSELMQLKLSNNRISGNIPNELSSCKKLVALDLSHNQLSGQLPTSLGEMPVLGQLDVSENQLSGKIPHNLGSVESLVEVNISHNHFHGTLPSTAAFLAINASAVTGNHLCDSDTDSTSGLAPCETDRNPTWWFVILCFLAGLAAFALGAFLIFYVRRRKSLEVRRVENEDGTWEMQYFNSETWKLITIDDVFCSAKERNVISKGRNWISYEGKCMANDMQFEVKEISDLNSVPLNFWEDMVEIGKLRHPNIVKLIGICRSGKGGYLVYEYAEGKSLSQVVRNLSWERRRKIAVGIAKALKFLHAHCSPVVLVGEMSPERVLVDGRDVPRLKLSPPGTICTDVKGSISSDYVSPEARNSKEVTGKSDIYGFGLILIELLTGRSPMDAEVGMQGSIVEWARYCYSDCHLDMWIDPMMKGGFASITRDNIVRTMDLALHCTATDPTARPCASHVLKALRAVTT 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1408 963 Gene3D Phosphorylase Kinase; domain 1 662 773 - -
Glsi08g1408 963 ProSiteProfiles Protein kinase domain profile. 642 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1408 963 Gene3D Ribonuclease Inhibitor 337 621 IPR032675 -
Glsi08g1408 963 Gene3D Ribonuclease Inhibitor 29 144 IPR032675 -
Glsi08g1408 963 Gene3D Ribonuclease Inhibitor 236 334 IPR032675 -
Glsi08g1408 963 Gene3D Transferase(Phosphotransferase) domain 1 775 963 - -
Glsi08g1408 963 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 662 773 - -
Glsi08g1408 963 SUPERFAMILY L domain-like 312 600 - -
Glsi08g1408 963 ProSiteProfiles Leucine-rich repeat profile. 121 143 IPR001611 GO:0005515
Glsi08g1408 963 Gene3D Ribonuclease Inhibitor 145 235 IPR032675 -
Glsi08g1408 963 Pfam Protein kinase domain 739 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1408 963 Pfam Leucine rich repeat 482 541 IPR001611 GO:0005515
Glsi08g1408 963 Pfam Leucine rich repeat 315 374 IPR001611 GO:0005515
Glsi08g1408 963 Pfam Leucine rich repeat 148 206 IPR001611 GO:0005515
Glsi08g1408 963 Pfam Leucine rich repeat 243 302 IPR001611 GO:0005515
Glsi08g1408 963 FunFam Leucine-rich repeat receptor protein kinase EMS1 236 320 - -
Glsi08g1408 963 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Glsi08g1408 963 FunFam Leucine-rich repeat receptor-like kinase 30 145 - -
Glsi08g1408 963 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 321 622 - -
Glsi08g1408 963 Pfam Leucine Rich Repeat 121 140 IPR001611 GO:0005515
Glsi08g1408 963 PRINTS Leucine-rich repeat signature 122 135 - -
Glsi08g1408 963 PRINTS Leucine-rich repeat signature 289 302 - -
Glsi08g1408 963 SMART LRR_typ_2 145 169 IPR003591 -
Glsi08g1408 963 SMART LRR_typ_2 265 289 IPR003591 -
Glsi08g1408 963 SMART LRR_typ_2 337 361 IPR003591 -
Glsi08g1408 963 SMART LRR_typ_2 119 143 IPR003591 -
Glsi08g1408 963 SMART LRR_typ_2 193 217 IPR003591 -
Glsi08g1408 963 SMART LRR_typ_2 363 385 IPR003591 -
Glsi08g1408 963 SMART LRR_typ_2 457 480 IPR003591 -
Glsi08g1408 963 SMART LRR_typ_2 241 264 IPR003591 -
Glsi08g1408 963 SMART LRR_typ_2 552 576 IPR003591 -
Glsi08g1408 963 SMART LRR_typ_2 504 528 IPR003591 -
Glsi08g1408 963 SUPERFAMILY Protein kinase-like (PK-like) 694 958 IPR011009 -
Glsi08g1408 963 SUPERFAMILY L domain-like 28 355 - -
Glsi08g1408 963 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 146 235 - -
Glsi08g1408 963 PANTHER UNNAMED PRODUCT 171 888 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1408 Glsi-ChrGlsi08 10288034 10291075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1408 17 959 Receptor kinase-like Gene Family AT2G25790 53.710 0.0 955
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Glsi08g1408 Pkinase 2.9e-19 CL0016