Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1401 ATGGCAGCTGATGAAGCCAACAATAATGTGAACGCACCGCTTGGGTTTTTGATAGAGGAAGTTGGGGAAAAAACCATGGATGAGTATGACAGCGGGGGCCGAAGCCCCGATAAGAATCCTGGGGCCGAAGACGAGGGCAGCACAGCTCCCCTTCCTGAGAAGGTCCAGGTTGGTGGTTCTCCGTTATACAGAATTGATAAAAAGCTGGGGAAGGGAGGATTTGGACAAGTCTATGTCGGTCGGCGTGTTGGAGCTGCAAATTGTCATGAACGAACTGGTCCTGGGGCTGTAGAAGTAGCCTTAAAGTTCGAGCATAGAAGCAGCAAAGGGTGTAATTATGGACCGCCTTATGAGTGGCAAGTTTACAATGCATTAGGGGGTAGTCATGGTGTTCCACGAGTTCATTACAAGGGGCAGCAAGGTGACTACTATGTCATGGTCATGGATATGCTAGGCCCTAGTCTATGGGATGTGTGGAATAACAACTCACACACGATGTCTATTGAAATGGTGGCATGTATCGCAATTGAGGCTACCTCGATATTAGAGAAGATGCATTCTAGAGGGTATGTGCACGGTGATGTAAAACCTGAGAACTTTCTGCTTGGTCCCCCTGGAACTCCTGATGAGAAAAGGCTGTTTCTGGTTGATCTTGGATTAGCTACCCGCTGGCGTGATAGTTCAACTGGTCTTCACGTGGAGTATGATCAACGCCCAGATGTATTTAGAGGGACAGTACGTTATGCAAGTGTGCATGCTCATCTTGGCAGAACAGGTAGTAGGAGAGATGACTTGGAATCTCTTGCTTACACACTTATCTTCCTTCTTCGTGGCCGATTACCATGGCAGGGATATCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAGAAGAAGATGTCCACTTCCCCAGACACTTTGTGTTGCTTTTGTCCTCAACCTTTCCGGCAGTTTGTTGACTATGTGGTGAATTTGAAGTTCGACGAGGAACCAAATTATGCAAAGTATATATCCCTTTTTGATGGTGTTGTTGGTCCAATTCCAGACATCAGGCCAATAAACACTGATGGTGCTCAGAAGCTTATATGTCAGGTTGGGCATAAAAGAGGGCGATTGACCATGGAAGAGGACGATGATGAACAGTCAAAGAAGAAGGTTAGAATAGGAATGCCAGCAACCCAGTGGATTAGTGTTTACAATGCTCGCCGACCAATGAAGCAAAGGTATCATTACAATGTTGCTGATGTGCGGCTGTCCCAACACATAGAGAAAGGAAATGAGGATGGGTTGTTTATCAGCAGTGTGGCTTCTTGTTCTAACCTTTGGGCACTTATTATGGATGCTGGCACTGGTTTCACTGCACAAGTTTATGAACTCTCACCTCACTTTCTTCACAAGGAATGGATTATGGAACAGTGGGAGAAGAATTACTACATAAGTACCGTAGCAGGAGCTAATAATGGTAGCTCATTGGTTGTAATGTCCAAAGGGACCCAGTACTTACAGCAGTCTTATAAAGTCAGTGATTCATTTCCATTCAAGTGGATCAATAAAAAATGGAGAGAAGGGTTTTATGTCACTGCCATGGCCACAGCTGGAAGTAGATGGGCAGTTGTTATGTCCCGTGGTGCAGGATTTTCAGACCAGGTTGTGGAACTTGATTTCCTGTATCCCAGCGAAGGTATTCATCAGAGGTGGGATGGTGGGTACCGCATCACATCAACTGCTGCAACTTGGGACCAAGCTGCTCTTGTTCTTAGTGTACCAAGAAGGAAACCAATCGATGAAACTCAAGAGACGCTTCGAACAACTGCTTTCCCTAGTACTCATATCAAGGAAAAATGGGCCAAGAACCTGTATATTGCATCTATTTGTTATGGGAGAACAGTCTCCTGTGTCAACATGCTTATGAGCAAAATTAGATCTGGTCCCATTTGGATGAGTCTTAAGATAGAAAGTTTGTATAGATTTGAACAAATAATTACTGTGTTCAAGGTATGTGCACAGTATCCAAAATCTGAATTGGCTCCTGGCCAGTCAATCTCGTCACTTGGTGCCTATTTTGTTAGATTCTTTTTCTACATGGCAAGAGCACATTTGATTCTAATTAGAAGTTGGCTTATGATGGAAGCTCAATCAAGATTTGAACATGTTGATTCAAACCCTGATAATGATGCTGCACAAACCTTTATGTCTGTAGTGAAGCTGTTGAAGTGA 2214 0.4422 MAADEANNNVNAPLGFLIEEVGEKTMDEYDSGGRSPDKNPGAEDEGSTAPLPEKVQVGGSPLYRIDKKLGKGGFGQVYVGRRVGAANCHERTGPGAVEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGQQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEATSILEKMHSRGYVHGDVKPENFLLGPPGTPDEKRLFLVDLGLATRWRDSSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMSTSPDTLCCFCPQPFRQFVDYVVNLKFDEEPNYAKYISLFDGVVGPIPDIRPINTDGAQKLICQVGHKRGRLTMEEDDDEQSKKKVRIGMPATQWISVYNARRPMKQRYHYNVADVRLSQHIEKGNEDGLFISSVASCSNLWALIMDAGTGFTAQVYELSPHFLHKEWIMEQWEKNYYISTVAGANNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGSRWAVVMSRGAGFSDQVVELDFLYPSEGIHQRWDGGYRITSTAATWDQAALVLSVPRRKPIDETQETLRTTAFPSTHIKEKWAKNLYIASICYGRTVSCVNMLMSKIRSGPIWMSLKIESLYRFEQIITVFKVCAQYPKSELAPGQSISSLGAYFVRFFFYMARAHLILIRSWLMMEAQSRFEHVDSNPDNDAAQTFMSVVKLLK 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1401 737 CDD STKc_CK1 63 339 - -
Glsi08g1401 737 PANTHER CASEIN KINASE-RELATED 63 594 - -
Glsi08g1401 737 ProSitePatterns Protein kinases ATP-binding region signature. 69 102 IPR017441 GO:0005524
Glsi08g1401 737 ProSiteProfiles Protein kinase domain profile. 63 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1401 737 Gene3D Transferase(Phosphotransferase) domain 1 37 387 - -
Glsi08g1401 737 MobiDBLite consensus disorder prediction 21 57 - -
Glsi08g1401 737 SUPERFAMILY Protein kinase-like (PK-like) 63 343 IPR011009 -
Glsi08g1401 737 FunFam casein kinase 1-like protein HD16 36 386 - -
Glsi08g1401 737 SMART serkin_6 63 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1401 737 Pfam Protein kinase domain 63 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1401 737 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Glsi08g1401 737 MobiDBLite consensus disorder prediction 21 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1401 Glsi-ChrGlsi08 10242331 10248719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1401 175 339 MAP Kinase Kinase Kinase AT5G50180 25.150 5.99e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Glsi08g1401 Pkinase 2.1e-15 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1401 08 10242331 10248719 Glsi10g0893 10 5752464 5758876 CCT
Glsi08g1401 08 10242331 10248719 Glsi08g1401 08 10242331 10248719 ECH