Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi08g1395 | ATGATTTCCCGGCAAAATTCCCAACCGGAGCAACGAGATGGAAAGTCTCAAATGTCCAAAATATCCCTATGTATCTTCGTATTCCCACTCCATTTCTTCCTTTTGCTCGGCGTCTCGGTAACCTCCCAGGTAAATTCGCAAACCACACCCGCCCAACAAACAATCCTACTCAAGGTTAAACACCAACTAGGCCATCCACCCTCGCTTCAATCTTGGAACTCGTCTTCCTCCCCTTGCGATTGGCCGGAGATACGCTGCACTGGTGGCGCTGTCACCGAGGTCCTCCTCCAGAACAAAAGCATCACCCAGAAGCTCCCGGCGACGATCTGCGACCTCAAGAATCTGACCAAGCTCAGCCTCTCAAACAATGACATCCCTGGAGAGTTCCCAACATTCTTGTACAACTGCTCCAACCTCCAATTCCTTGACCTGTCCCAGAACTACTTCGTCGGTCCAATCCCCGATGACATTGATCGACTCAAAACTCTGAGGTACTTAGACCTGAGCGCCAACAATTTCTCCGGTGATGTGCCGGCGGCGATCGGAAGACTCTCAGAGTTACAGACGCTGTACCTCTATAGCAATGAGTTCAACGGCACGTTTCCCAAGGAAATCGGGAGCTTATCGAATCTCGAAATCCTTGGTTTGGCCTATAATGACAAGTTTGTGCCCATGGCTATCCCACCAGAGTTTGGGAGCTTAAGGAATTTGAGGATCATGTGGATAACACAGTCCAATTTAATGGGAGAGATCCCTGAAAGTTTTGCCAATCTTACCAGCCTTGTACAACTGGATTTGTCGATGAACAGTTTGACAGGCAGCATCCCCAGCGGTTTGTTCTCGCTCAGGAATTTACAATTTTTGTATCTATTCCACAATAGATTGTCTGGTGAGCTACCAAGTTCGGTCCAGGCCTTGAATTTGGTTGAAGTCGATTTGGCAATGAACAATTTGACGGGTCCGATACCAGAAGATTTTGGTAAGTTGGAGAATTTGACGGTGCTAAATCTGTATATGAATCAATTATCTGGTCGGATCCCGAGAAGTTTAGGCCTAATTCGCAATCTACAGTATTTGAAGGTTTTTAGCAATAAGTTAAATGGAACGCTGCCACCAGAATTGGGCCTATATTCAAAGCTTTCAGCTTTTGAAGTTGCCGAGAATCAACTGAGTGGTGGGTTACCTCAACATTTATGTGCCGGTAATACTTTGCAAGGAGTGATTGCTTTTTCTAACAATCTTAGCGGAGAGTTGCCGGGGTCGCTTGGAAATTGTACAACTCTCCGCACAATTCAACTTTTCAATAACAAGTTTTCTGGTGAGGTTCCTTTGAGCCTCTGGACTTCCAGGAACCTATCAACCTTGATGCTAAGCGGAAACTCGTTTTTAGGTCCACTTCCAAAAAAACTAGGTTGGAATATGTCGAGACTGGAGATCAGAAACAACAAATTTTCAGGTCAGATATCTCTTGGAATTTCTTCCGCTGTAAATCTAGCAGTTTTTGATGCGAGAAACAATCTGCTTTCTGGTGAAATTCCAAAGGAATTGACGGCTCTTTCCCGGCTTAATTCTCTCATGCTTGACGGTAATCAACTTTCCGGTGCACTTCCATCGGAGATAGTCTCCTGGAAATCACTGAATACTTTGACTCTCTCAAGAAACAAACTTTCCGGGCAAATTCCGGTAGCTATGGGTGATCTCCCTAACCTTGTTTACTTGGACTTATCTGAAAATGATATCTCCGGTGAAATCCCACCTCAGCTTGGCAATTTGAGGCTTATTTTTCTCAACTTGTCCTCCAACATGCTTTCCGGGAACATCCCAGATGAGTTTAGTAACCTTGCTTATGAAAACAGTTTCTTGCACAATCCTAATCTATGTGCTTACAATCCAAATCTCAAACCTTCAAGCTGCTTGACCAAAACCCCAAACCCCAACAAATCGTCTACCAAATTCCTTGCCTTGATTATTGTTCTCACCATCAGTGTGATGCTAGCCACTGCCTCACTGGCCTTCTATAGGTTCAAAGGCCACTGGGGCAAGAAGAATTGTGGGCGTAGCCTTTCAGCATGGAGGCTTACTACATTCCAGAGGATGGATCTCACGGAATGGAACCTCTTGTCCAACTTGACAGATGATAACCTCATTGGAAGTGGGGGCTTCGGGGAAGTTTACCGAATTGCCTCTAATCGTCCGGGTAAGTATGTTGCTGTAAAAAGGATTTGGAATAGCAAAAACTTGGATGACAAGGTGGAGAAAGAATTCATGGCTGAGGTTGAAATCCTGGGCACGATTCGGCATTCCAATATAGTGAAGCTGTTGTGTTGCGTTTCAAGTGAAAAATCAAAGCTTCTTGTCTATGAATACATGGAAAATCAGAGCCTGGACAGATGGCTTCATGGAAAGAAAAAAGCATCGGCTACAGGGTTGAGCTCACCTACCAGTTATTTGCACTTGAATTGGCCAACTAGGTTGAAGATTGCCATTGGGGCTGCACAAGGCCTATGTTACATGCACCATGAGTGCGCCCTACCAGTCATCCACCGAGATGTCAAGTGTAGCAATATATTACTGGACTCCGAATTCAGAGCGAGAATTGCAGATTTTGGGCTTGCCAGATTGTTGGCAAAGTCTGGGGAGCCACATAGCTTGTCTGACATAGCAGGGTCTTTTGGCTACATTCCCCCAGAATATGCCTATTCAACAAAGATCAACGAGAAAGTCGATGTATATAGTTTTGGGGTTGTACTCCTAGAGCTTGTAACGGGAAAAGAACCTAATTGTGGAAAAGAGCATATAGGCCTAGCTGATTGGGCATGGCAGCATTATAGTGAAGGGAAGTGCCTTGCTGATGCCTTGGATGAAGAAATCAAAGAAACTTGTCATGTGGAAGAGATGACAACCGTCTTTAAATTAGGCCTTTTTTGCACAAGCACATTACCCTCAAATAGGCCTTCTATGAAGGAGATTTTGCAGGTTCTTCGTCAGTGTTGTCCTCCAGATAAAAAAGTGGGAACTGAGTCTGATATTACTCCCCTTGTCAGCGATACCATGTACATTTCTAGTTACAAGGATAGTAACAAGGCAATAGGCGAAAATGACGAAAGCTGCTTGCAAAGCATATAA | 3126 | 0.4469 | MISRQNSQPEQRDGKSQMSKISLCIFVFPLHFFLLLGVSVTSQVNSQTTPAQQTILLKVKHQLGHPPSLQSWNSSSSPCDWPEIRCTGGAVTEVLLQNKSITQKLPATICDLKNLTKLSLSNNDIPGEFPTFLYNCSNLQFLDLSQNYFVGPIPDDIDRLKTLRYLDLSANNFSGDVPAAIGRLSELQTLYLYSNEFNGTFPKEIGSLSNLEILGLAYNDKFVPMAIPPEFGSLRNLRIMWITQSNLMGEIPESFANLTSLVQLDLSMNSLTGSIPSGLFSLRNLQFLYLFHNRLSGELPSSVQALNLVEVDLAMNNLTGPIPEDFGKLENLTVLNLYMNQLSGRIPRSLGLIRNLQYLKVFSNKLNGTLPPELGLYSKLSAFEVAENQLSGGLPQHLCAGNTLQGVIAFSNNLSGELPGSLGNCTTLRTIQLFNNKFSGEVPLSLWTSRNLSTLMLSGNSFLGPLPKKLGWNMSRLEIRNNKFSGQISLGISSAVNLAVFDARNNLLSGEIPKELTALSRLNSLMLDGNQLSGALPSEIVSWKSLNTLTLSRNKLSGQIPVAMGDLPNLVYLDLSENDISGEIPPQLGNLRLIFLNLSSNMLSGNIPDEFSNLAYENSFLHNPNLCAYNPNLKPSSCLTKTPNPNKSSTKFLALIIVLTISVMLATASLAFYRFKGHWGKKNCGRSLSAWRLTTFQRMDLTEWNLLSNLTDDNLIGSGGFGEVYRIASNRPGKYVAVKRIWNSKNLDDKVEKEFMAEVEILGTIRHSNIVKLLCCVSSEKSKLLVYEYMENQSLDRWLHGKKKASATGLSSPTSYLHLNWPTRLKIAIGAAQGLCYMHHECALPVIHRDVKCSNILLDSEFRARIADFGLARLLAKSGEPHSLSDIAGSFGYIPPEYAYSTKINEKVDVYSFGVVLLELVTGKEPNCGKEHIGLADWAWQHYSEGKCLADALDEEIKETCHVEEMTTVFKLGLFCTSTLPSNRPSMKEILQVLRQCCPPDKKVGTESDITPLVSDTMYISSYKDSNKAIGENDESCLQSI | 1041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi08g1395 | 1041 | PANTHER | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED | 282 | 995 | - | - | |
| Glsi08g1395 | 1041 | SMART | LRR_typ_2 | 258 | 282 | IPR003591 | - | |
| Glsi08g1395 | 1041 | SMART | LRR_typ_2 | 184 | 208 | IPR003591 | - | |
| Glsi08g1395 | 1041 | SMART | LRR_typ_2 | 329 | 353 | IPR003591 | - | |
| Glsi08g1395 | 1041 | SMART | LRR_typ_2 | 519 | 543 | IPR003591 | - | |
| Glsi08g1395 | 1041 | SMART | LRR_typ_2 | 112 | 136 | IPR003591 | - | |
| Glsi08g1395 | 1041 | SMART | LRR_typ_2 | 567 | 591 | IPR003591 | - | |
| Glsi08g1395 | 1041 | Gene3D | Ribonuclease Inhibitor | 307 | 401 | IPR032675 | - | |
| Glsi08g1395 | 1041 | SUPERFAMILY | L domain-like | 306 | 618 | - | - | |
| Glsi08g1395 | 1041 | FunFam | Kinase family with leucine-rich repeat domain-containing protein | 790 | 1010 | - | - | |
| Glsi08g1395 | 1041 | Pfam | Leucine rich repeat | 114 | 173 | IPR001611 | GO:0005515 | |
| Glsi08g1395 | 1041 | Pfam | Leucine rich repeat | 520 | 580 | IPR001611 | GO:0005515 | |
| Glsi08g1395 | 1041 | Pfam | Leucine rich repeat | 235 | 295 | IPR001611 | GO:0005515 | |
| Glsi08g1395 | 1041 | Pfam | Leucine rich repeat | 307 | 366 | IPR001611 | GO:0005515 | |
| Glsi08g1395 | 1041 | SMART | serkin_6 | 710 | 994 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Glsi08g1395 | 1041 | Gene3D | Ribonuclease Inhibitor | 473 | 655 | IPR032675 | - | |
| Glsi08g1395 | 1041 | Pfam | Protein kinase domain | 712 | 992 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Glsi08g1395 | 1041 | CDD | STKc_IRAK | 716 | 994 | - | - | |
| Glsi08g1395 | 1041 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 846 | 858 | IPR008271 | GO:0004672|GO:0006468 | |
| Glsi08g1395 | 1041 | SUPERFAMILY | Protein kinase-like (PK-like) | 698 | 994 | IPR011009 | - | |
| Glsi08g1395 | 1041 | FunFam | Receptor-like protein kinase HSL1 isoform A | 49 | 199 | - | - | |
| Glsi08g1395 | 1041 | Gene3D | Transferase(Phosphotransferase) domain 1 | 790 | 1010 | - | - | |
| Glsi08g1395 | 1041 | ProSiteProfiles | Protein kinase domain profile. | 710 | 1004 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Glsi08g1395 | 1041 | Gene3D | Phosphorylase Kinase; domain 1 | 693 | 789 | - | - | |
| Glsi08g1395 | 1041 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 202 | 299 | - | - | |
| Glsi08g1395 | 1041 | FunFam | Leucine-rich repeat receptor-like protein kinase TDR | 326 | 638 | - | - | |
| Glsi08g1395 | 1041 | Gene3D | Ribonuclease Inhibitor | 224 | 306 | IPR032675 | - | |
| Glsi08g1395 | 1041 | FunFam | Receptor-like protein kinase HSL1 | 690 | 789 | - | - | |
| Glsi08g1395 | 1041 | Gene3D | Ribonuclease Inhibitor | 402 | 472 | IPR032675 | - | |
| Glsi08g1395 | 1041 | SUPERFAMILY | L domain-like | 55 | 391 | - | - | |
| Glsi08g1395 | 1041 | Gene3D | Ribonuclease Inhibitor | 49 | 223 | IPR032675 | - | |
| Glsi08g1395 | 1041 | Pfam | Leucine rich repeat N-terminal domain | 52 | 86 | IPR013210 | - | |
| Glsi08g1395 | 1041 | ProSitePatterns | Protein kinases ATP-binding region signature. | 716 | 739 | IPR017441 | GO:0005524 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi08g1395 | Glsi-ChrGlsi08 | 10184873 | 10188098 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi08g1395 | 38 | 1014 | Receptor kinase-like Gene Family | AT5G25930 | 56.575 | 0.0 | 1081 |
Transcription factors information