Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1392 ATGATTGGACAGAACAGAACCAAAAGTGGGGTTGACAGGATTAAGGCTATCACAGTCCCCGTCAAGTATGTTGCATCATTGGCGCGAGCACTCATCTATTTCCATGGAAAGCATGTAATACATAGGGATATTAAACCAGAGAACCTTCTTATTTGTGCACAGAAGATAGCAGACTTTGGGTGGTCAGTTCACACGTTCAATCACAGGCGAACCATTTGTGGTACATTGGATTACCTACCTCCTGAGATGGTGGAGAGTGTGGATCATGATTCAAGGGTGGATATATTGTGTCTTAGTGTCTTGTGCTATGAGTTTCTTTACGGGGCACCTCCTTTTGATGCTAAAGAACAATCTGATACATATATAAGGATCGTACAAGTGGATCTCAGGTTCCCTCCTAAACCAATTATGTCCTCCGCTGCAAAGGACCTCATCAGTCAGATGCTGGTCAAGTATTCCTCTCAACGTCTACCAATACACAATCCTCTTGAACATATTGGATTGTTCAGAATGCGGAGCCCTCTTCTGTATATGGGGCCTAGTGTACCTCGTCAATAG 558 0.4373 MIGQNRTKSGVDRIKAITVPVKYVASLARALIYFHGKHVIHRDIKPENLLICAQKIADFGWSVHTFNHRRTICGTLDYLPPEMVESVDHDSRVDILCLSVLCYEFLYGAPPFDAKEQSDTYIRIVQVDLRFPPKPIMSSAAKDLISQMLVKYSSQRLPIHNPLEHIGLFRMRSPLLYMGPSVPRQ 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1392 185 Gene3D Transferase(Phosphotransferase) domain 1 22 158 - -
Glsi08g1392 185 SMART serkin_6 1 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1392 185 ProSiteProfiles Protein kinase domain profile. 1 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1392 185 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 21 165 IPR030616 GO:0004672
Glsi08g1392 185 ProSitePatterns Serine/Threonine protein kinases active-site signature. 39 51 IPR008271 GO:0004672|GO:0006468
Glsi08g1392 185 Pfam Protein kinase domain 22 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1392 185 SUPERFAMILY Protein kinase-like (PK-like) 21 177 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1392 Glsi-ChrGlsi08 10157492 10158992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1392 23 164 AGC Kinase Gene Family AT1G48490 32.759 8.28e-24 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Glsi08g1392 Pkinase 4.7e-31 CL0016