Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1378 ATGCATCCTCAAACCATTTTCTTTCTTCTTGTTATTTCCATGTCTTGTATTCCACAAGTCATCAGTAGCAATCAGTCTCAGTTTTTTGCTCTGATGAAGGAGTCTCTCTCCGGGAACTACCCCCCGAATTGGGATGTCACAGCAGAAAAACCTGTCTGCAACGTCACTGGAGTTAGCTGCAACAACCATGGGGATGTCATCAATCTTGACGTCTCCAGCTGGTCACTTTCTGGGGACTTCCCATCTGATATATGCTCTTACTTGCCAGAGTTACGCGTTCTCCGCCTCAGCCAGAACCGGTTCAGGGGAAACTTTCCTCACACCATACTAAACTGTTCCCACTTGCAAGAGCTTAACATGAGCTATATGTATCATGCTGGAAAACTTCCAGATTTCTCACCTATGAAATCCCTTAAGATTCTTGATTTGTCCTACAACCTCTTCACCGGTCAGTTCCCCATGTCCGTATTCAATCTCACCAATCTTGAGGTGCTTAACTTCAATGAGAATGGAGGCTTCAACTTATGGCAGCTGCCAGAGGATATTGACAGGCTAAAAAATCTCAGATCTATGGTCTTGACAACATGTATGGTGCATGGCCAAATCCCGCCATCCATAGGGAACCTTACGTCTCTTGTTGATCTTGAACTGAGTGGCAATTTCCTCACTGGTCAAATTCCTGCAGAGCTTGGATTGCTGAAAAACTTGCAAGATCTTGAGCTTTACTATAACGAACTTGTTGGGACTATACCTGAGGAACTAGGAAATCTCAAGGAGCTCAGAGATTTGGATATGTCAGTCAATAAGTTGACGGGGAATATCCCAGAATCTATATGTGGGCTTCCCAAGCTCGAAGTCTTGCAGCTTTACAACAATAGCCTCGCAGGAGAGATCCCAGCTGTCACAGAAAACTCAACATCATTGAGAATGTTATCTCTTTACGACAATTTCCTGAGCGGCCAAGTCCCAAGAAATCTGGGTCAATTCTCAGGAATGGTAGTTCTAGATTTGTCCGAAAACCAACTATCTGGTGCATTGCCAACAGAGGTTTGCAAGGGAGGTAAACTGCTCTACTTTCTTGTTCTGGATAATATGTTTTCTGGAGACCTACCTGACAATTATGCGAAGTGTTTGACGCTTTTGAGGTTCCGAGTCAGTAACAACCGTTTGGAGGGTTCAATTCCCGAGGGACTGTTTGGCCTGCCGCATGTTTCAATCATTGATTTGAGTTACAATAATCTGAGTGGTCCAATTTCTGAGAGCATTGGAAATCCTACAAACTTGTCAGAACTGTTCATACAGCGGAACCGCATTTCAGGATCCATACCTCCTACAATCTCTCATGCTACTAACCTGGTCAAGATTGACTTCAGTGATAACCTTCTCTCTGGTCCAATACCTTCTGAAATTGGCAATTTGAAAGGGCTTAATTTACTGATGTTGCAAGGGAACAAACTGAATTTTTATATCCCCACTTCACTTTCCTTGTTGAAGTCTCTCAACGTTCTTGATCTCTCCAACAATCTTCTGACTGGGAGCATCCCTGAAAGTCTCTCAGCACTGCTACCCAACTCTATCAACTTTTCAAACAATTTACTTTCTGGCCCAATTCCTTCCTCATTCATAAAAGGAGGCTTACTAGAAAGCTTTTCAGGGAATCCGGGTCTTTGTGTGTTGCCAGTCTATGCTAACGCATCGGATCAAAATTTCCTTGTATGCTCACAGACTGACAACAGAAAGAGGCTAAATACCATCTGGGTAGCTGGGATTTCAGTTGTTTTAATCATCACCGGGTTTGGAGCTGTCTTATTTCTAAAACGTAAGCGTAGCAAAGAGGGGCCTTCTGTGGAACACGATGATGAGACACTATCTTTGTCCTTCTTCTCTTATGACATGAAGAGCTATCACAGGTTAACTTTCGACCAACAGGAAATCACTGAGGCCATGGTCGATAAGAATATAGTGGGGTATGGTGGATCTGGGACAGTGTACAAGATTGAGTTAAAGAGCGGTGAACTTGTCGCAGTCAAGAGGCTATGGAGCAGAACGTCAAAGGATTCGGCTCAAGAGGATCAAATGGTTTTGGACAAGGCGTTGAAAACTGAGGTTGGGACACTGGGAAGTATAAGACACAAGAACATAGTCAAACTGTACGGCTACTTCTCGAGCTTCGACTGCAGCTTGTTGGTTTATGAGTACATGCCAAATGGTAATCTTTGGGATGCTCTGCACAAAGGTTGGATCCACTTGGACTGGCCTACTCGCCATCAGATTGCACTGGGGATTGCACAGGGTTTAGCATACCTCCACCACGATTTGCTTCCTCCCATTATTCATAGAGACATCAAGTCAACTAACATCCTATTGGATGTTAATTACCAGCCCAAGGTTGCAGATTTTGGGATCGCCAAGGTATTACAAGCGAGAGGAGGGAAAGATTCCACAACAACTGTCATTGCAGGAACGTATGGTTACCTAGCACCAGAATATGCATATACTTCTAAAGCTACAACCAAGTGTGATGTCTACAGTTTTGGGGTGACTCTAATGGAACTGATAACTGGGAAGAAGCCCGTGGAGGCAGAATTCGGAGAGAACAAGAATATTGTCTATTGGGTTTCAAGCAAGGTAGACAGCAAGGAAGGGGTTAATGAGGTAATAGACAAGAGATTATCAGGTTTATTCAGGGAGGAAATTATTCAAATGATCCGGATTGCCATTCGCTGCACCTACAAAGGTCCAGCTAATCGACCAACCATGAAAGAGGTGGCTCAGCTGCTGATTGATGCTGACCCATGCAAATTTGATTCTTGCAAGATGTCAGATGAGACCAAATAA 2838 0.4383 MHPQTIFFLLVISMSCIPQVISSNQSQFFALMKESLSGNYPPNWDVTAEKPVCNVTGVSCNNHGDVINLDVSSWSLSGDFPSDICSYLPELRVLRLSQNRFRGNFPHTILNCSHLQELNMSYMYHAGKLPDFSPMKSLKILDLSYNLFTGQFPMSVFNLTNLEVLNFNENGGFNLWQLPEDIDRLKNLRSMVLTTCMVHGQIPPSIGNLTSLVDLELSGNFLTGQIPAELGLLKNLQDLELYYNELVGTIPEELGNLKELRDLDMSVNKLTGNIPESICGLPKLEVLQLYNNSLAGEIPAVTENSTSLRMLSLYDNFLSGQVPRNLGQFSGMVVLDLSENQLSGALPTEVCKGGKLLYFLVLDNMFSGDLPDNYAKCLTLLRFRVSNNRLEGSIPEGLFGLPHVSIIDLSYNNLSGPISESIGNPTNLSELFIQRNRISGSIPPTISHATNLVKIDFSDNLLSGPIPSEIGNLKGLNLLMLQGNKLNFYIPTSLSLLKSLNVLDLSNNLLTGSIPESLSALLPNSINFSNNLLSGPIPSSFIKGGLLESFSGNPGLCVLPVYANASDQNFLVCSQTDNRKRLNTIWVAGISVVLIITGFGAVLFLKRKRSKEGPSVEHDDETLSLSFFSYDMKSYHRLTFDQQEITEAMVDKNIVGYGGSGTVYKIELKSGELVAVKRLWSRTSKDSAQEDQMVLDKALKTEVGTLGSIRHKNIVKLYGYFSSFDCSLLVYEYMPNGNLWDALHKGWIHLDWPTRHQIALGIAQGLAYLHHDLLPPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYTSKATTKCDVYSFGVTLMELITGKKPVEAEFGENKNIVYWVSSKVDSKEGVNEVIDKRLSGLFREEIIQMIRIAIRCTYKGPANRPTMKEVAQLLIDADPCKFDSCKMSDETK 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1378 945 Pfam Leucine Rich Repeat 500 521 IPR001611 GO:0005515
Glsi08g1378 945 ProSiteProfiles Protein kinase domain profile. 649 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1378 945 Gene3D Ribonuclease Inhibitor 175 280 IPR032675 -
Glsi08g1378 945 Pfam Leucine rich repeat 235 294 IPR001611 GO:0005515
Glsi08g1378 945 FunFam leucine-rich repeat receptor-like protein kinase TDR 734 938 - -
Glsi08g1378 945 Gene3D Ribonuclease Inhibitor 287 568 IPR032675 -
Glsi08g1378 945 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 23 175 - -
Glsi08g1378 945 ProSitePatterns Protein kinases ATP-binding region signature. 655 677 IPR017441 GO:0005524
Glsi08g1378 945 ProSiteProfiles Leucine-rich repeat profile. 499 522 IPR001611 GO:0005515
Glsi08g1378 945 FunFam Receptor protein-tyrosine kinase CEPR1 281 567 - -
Glsi08g1378 945 Gene3D Transferase(Phosphotransferase) domain 1 734 939 - -
Glsi08g1378 945 FunFam receptor protein-tyrosine kinase CEPR1 632 733 - -
Glsi08g1378 945 SUPERFAMILY RNI-like 65 351 - -
Glsi08g1378 945 PANTHER LEUCINE RICH REPEAT KINASE 2 206 932 - -
Glsi08g1378 945 SMART LRR_sd22_2 257 283 - -
Glsi08g1378 945 SMART LRR_sd22_2 233 256 - -
Glsi08g1378 945 SMART LRR_sd22_2 425 440 - -
Glsi08g1378 945 SMART LRR_sd22_2 305 328 - -
Glsi08g1378 945 SMART LRR_sd22_2 497 520 - -
Glsi08g1378 945 SMART LRR_sd22_2 449 475 - -
Glsi08g1378 945 SUPERFAMILY RNI-like 298 565 - -
Glsi08g1378 945 Gene3D Ribonuclease Inhibitor 24 174 IPR032675 -
Glsi08g1378 945 ProSitePatterns Serine/Threonine protein kinases active-site signature. 777 789 IPR008271 GO:0004672|GO:0006468
Glsi08g1378 945 FunFam Leucine-rich repeat receptor-like protein kinase 176 277 - -
Glsi08g1378 945 SMART serkin_6 649 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1378 945 Pfam Protein kinase domain 651 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1378 945 SMART LRR_typ_2 281 305 IPR003591 -
Glsi08g1378 945 SMART LRR_typ_2 497 521 IPR003591 -
Glsi08g1378 945 SMART LRR_typ_2 209 232 IPR003591 -
Glsi08g1378 945 SMART LRR_typ_2 159 185 IPR003591 -
Glsi08g1378 945 SMART LRR_typ_2 233 257 IPR003591 -
Glsi08g1378 945 SMART LRR_typ_2 88 112 IPR003591 -
Glsi08g1378 945 SMART LRR_typ_2 473 496 IPR003591 -
Glsi08g1378 945 SMART LRR_typ_2 329 353 IPR003591 -
Glsi08g1378 945 Gene3D Phosphorylase Kinase; domain 1 632 733 - -
Glsi08g1378 945 SUPERFAMILY Protein kinase-like (PK-like) 635 927 IPR011009 -
Glsi08g1378 945 PRINTS Leucine-rich repeat signature 497 510 - -
Glsi08g1378 945 PRINTS Leucine-rich repeat signature 332 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1378 Glsi-ChrGlsi08 10063273 10066293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1378 20 932 Receptor kinase-like Gene Family AT5G49660 66.122 0.0 1221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi08g1378 Pkinase 5.8e-47 CL0016