Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1377 ATGTTACGCCCACTCCTCTCTCTTTTCTACCTCCTCTGTTTCATCTCACTACTCTCCGTTGTTGAATCTGACCAACTTCAAATTCTTCTCAACCTCAAATCCGCACTCGGCAAATCAAATTCCCATGTCTTTGACACTTGGAATGCCACCGCTTCCTTTTGCAATTTCAATGGGATCGCTTGCAATTCAGACGGTTCCGTGACGGGAATTGAGCTCTCCAATCATAAGTTATCTGGGGTTCTTCCTTTGGACTCCATTTGCCAGCTTCCTTCCCTCGAGAAGCTCTCATTCGGGTTCAACTACCTGTATGGCAAGGTTGCGGAGGATTTGAAAAACTGTGTCAACTTACGTTACCTAGACTTGGGAAACAATATTTTCTCAGGAACATTTCCGGACATATCTCCTCTCAGCCAATTGCAGTATCTGTATTTGAATCAAAGTGGATTCTCTGGAATTTTTCCATGGAGATCCCTGCAAAATATGACGGGTCTCGTGCGATTAAGTATCGGAGATAACCCTTTTGATCGAACTCCTTTTCCAGCTGAGATAGTGAACCTTAGGAACCTCAATTGGCTCTATCTAACGAATTGCAGCCTCGAAGGGAAAATACCGGCGGGGATTGGTAACCTCACAGAGCTTATAAATTTAGAGATGTCGAGCAACTTTATATCCGGTGAGATTCCGGCAGAGATTGGGAAGCTTCAGAAACTAAGGCAGCTTGAGTTCTACGACAACTTATTCACTGGAAAAATTCCAAATGGGCTAAGAAATCTCACAAGCCTCGAGAAATTGGATGGGTCCACAAATAGCCTTGAAGGCGATCTCTCTGAGTTGAGGTTCTTGTCGAATCTGGTTAGTCTGCAACTATTTGTCAACAATTTATCTGGGAAAATTCCACCCGAGTTTGGTGAATTCAAAAAGCTCGTGAACATCTCTTTATACACTAACAGACTGTCCGGACCTATTCCTCAGAAGCTTGGTTCTTGGGCAGAGTTTGATTACATTGATGTTTCTGAGAACTTCTTGACGGGTCCTATTCCGCCAGATATGTGCAAAAAGGGAAAGATGCATTCCCTGCTAGTGCTCCAGAACAAGCTCACCGGAGAAATACCTGCAACTTATGCAAACTGTTCCACTATGCGTCGATTCAGAGTCAGCAACAACTCTCTTTCTGGTGCTGTTCCTCCAGGAATATGGGGATTGCCAAACGCAGTGATAATCGATATTGAACTGAATCAATTGGAAGGTCCAATTACTTCAAATATCAAGAATGCGAAGACCCTGGCCCAGATATTTGCTAGAAGGAATCGCTTGGCCGGTGAAATACCTGTAGAAATTTCAAAAGCGACGTCCTTGATGACAATTGATCTGAGCGAAAATCAAATTTCCGGAGAAATTCCGGTGGGTATGGGGGAGCTCAAACAACTGAGCAGTCTTCATTTACAGAGCAACAAATTATCTGGGCCAATACCAGACTCTTTGGGGTCGTGCAATTCCCTTACTGACATTGAACTGGCCAAGAATTCACTCTCCGGAAAAATCCCTTCATCGTTGGGTCATTTACCGGCTCTTAATTCCCTGAATATGTCCCAAAATGAACTCTCCGGTGAAATTCCAGCGAGTTTCACACTCCTCCGGCTGAGCCTTTTTGATTTATCAAATAACCGTTTAACAGGTCCAATACCACAATCTCTATCCATTAAAGCTTACAATGGCAGCCTTGCTGGAAACCCAGGTCTCTGCAGCCTTGACACGATCGACTCTTTCAGACGCTGCTCTGCTAGTTCTGGCATGTCCAGAAACGTCCGTACACTCATCGTTTGCTTCATAGTAGCGCTAATTATGCTGCTCGTTTGTCTGGGTCTTTACTTGCAGTTGAAAAAGGAGAAAGATCGAGAACGCTCATTGAAGGAAGAATCTTGGGATGTGAAATCCTTCCACGTCATAAATTTCACAGAGGATGAGATTCTGGATTCCATTAAGCCAGAGAATCTAATTGGGAAAGGAGGGTCCGGAAACGTATATAGGGTCATACTCTCAAACGGTAAAGAACTTGCCGTTAAGCACATCTGGAATATCGATTCCACCGAGCGGAAGAAGAGCCAGAGTAGTACCCCGATGCTTGGGAAGCGTGACGGGAAGTCCAAGGAATTCGATGCAGAGGTGCAGACGTTGAGCTCAATAAGGCATGTGAACGTGGTAAAGCTTTATTGCAGCATCACAAGCGAGGACTCCAGCTTGTTGGTGTATGAATATTTACCAAATGGAAGCTTATGGGATCGGCTTCACACTAGTAGGAAGGTGGAGCTTGATTGGGAAAAAAGGCATGACATTGCGGTCGGTGCAGCCAAAGGGTTGGAGTACCTCCATCATGGGTACGAGAGGCCTGTGATTCACAGGGACGTGAAATCTAGTAACATTTTGTTGGATGAGTTCTTGAAGCCTAGGATTGCTGATTTTGGGCTAGCTAAAATTGTTCGAGCCAATGTTGGCCAGGACTCTACTCATGTCATTGCCGGAACACATGGGTATATCGCTCCCGAATATGGGTACACATACAAAGTGAACGAGAAAAGTGATGTGTACAGCTTTGGAGTGGTTTTGATGGAGCTGGTAACCGGGAAAAGGCCCATTGAAGTAGAATATGGAGAAAACAAAGACATAGTGAGCTGGGTGTGCAGCAAGGTGCAGAGCAAAGAGAGCTTAACGAGTTTGGTGGACTCCAGAATAGCAGAGATGTATAAAGAGGAGGGTGTGAAGATGTTGGGAATAGCAATTCTGTGCACGGCAAGGCTTCCAGCTTTAAGACCCACCATGAGAAGTGTGGTTCAAATGCTTGAGGATGCCGAGCCTTGTAAATTGGTTGATATTGTCATTAGCAAAGACGGGTGCGAAAAGAAAATGGGAGAGACTGACACGGAAAAGCTCAAACCAAGCGCCTAA 2943 0.4492 MLRPLLSLFYLLCFISLLSVVESDQLQILLNLKSALGKSNSHVFDTWNATASFCNFNGIACNSDGSVTGIELSNHKLSGVLPLDSICQLPSLEKLSFGFNYLYGKVAEDLKNCVNLRYLDLGNNIFSGTFPDISPLSQLQYLYLNQSGFSGIFPWRSLQNMTGLVRLSIGDNPFDRTPFPAEIVNLRNLNWLYLTNCSLEGKIPAGIGNLTELINLEMSSNFISGEIPAEIGKLQKLRQLEFYDNLFTGKIPNGLRNLTSLEKLDGSTNSLEGDLSELRFLSNLVSLQLFVNNLSGKIPPEFGEFKKLVNISLYTNRLSGPIPQKLGSWAEFDYIDVSENFLTGPIPPDMCKKGKMHSLLVLQNKLTGEIPATYANCSTMRRFRVSNNSLSGAVPPGIWGLPNAVIIDIELNQLEGPITSNIKNAKTLAQIFARRNRLAGEIPVEISKATSLMTIDLSENQISGEIPVGMGELKQLSSLHLQSNKLSGPIPDSLGSCNSLTDIELAKNSLSGKIPSSLGHLPALNSLNMSQNELSGEIPASFTLLRLSLFDLSNNRLTGPIPQSLSIKAYNGSLAGNPGLCSLDTIDSFRRCSASSGMSRNVRTLIVCFIVALIMLLVCLGLYLQLKKEKDRERSLKEESWDVKSFHVINFTEDEILDSIKPENLIGKGGSGNVYRVILSNGKELAVKHIWNIDSTERKKSQSSTPMLGKRDGKSKEFDAEVQTLSSIRHVNVVKLYCSITSEDSSLLVYEYLPNGSLWDRLHTSRKVELDWEKRHDIAVGAAKGLEYLHHGYERPVIHRDVKSSNILLDEFLKPRIADFGLAKIVRANVGQDSTHVIAGTHGYIAPEYGYTYKVNEKSDVYSFGVVLMELVTGKRPIEVEYGENKDIVSWVCSKVQSKESLTSLVDSRIAEMYKEEGVKMLGIAILCTARLPALRPTMRSVVQMLEDAEPCKLVDIVISKDGCEKKMGETDTEKLKPSA 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1377 980 Gene3D Ribonuclease Inhibitor 179 278 IPR032675 -
Glsi08g1377 980 SUPERFAMILY RNI-like 311 567 - -
Glsi08g1377 980 FunFam Leucine-rich receptor-like protein kinase family protein 181 277 - -
Glsi08g1377 980 Pfam Leucine rich repeat 475 534 IPR001611 GO:0005515
Glsi08g1377 980 SUPERFAMILY Protein kinase-like (PK-like) 649 947 IPR011009 -
Glsi08g1377 980 Gene3D Ribonuclease Inhibitor 22 178 IPR032675 -
Glsi08g1377 980 SMART serkin_6 660 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1377 980 FunFam Probable inactive receptor kinase RLK902 22 180 - -
Glsi08g1377 980 Pfam Leucine Rich Repeat 115 131 IPR001611 GO:0005515
Glsi08g1377 980 Pfam Leucine Rich Repeat 188 210 IPR001611 GO:0005515
Glsi08g1377 980 Gene3D Transferase(Phosphotransferase) domain 1 753 961 - -
Glsi08g1377 980 ProSitePatterns Protein kinases ATP-binding region signature. 666 688 IPR017441 GO:0005524
Glsi08g1377 980 Pfam Protein kinase domain 663 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1377 980 ProSitePatterns Serine/Threonine protein kinases active-site signature. 797 809 IPR008271 GO:0004672|GO:0006468
Glsi08g1377 980 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Glsi08g1377 980 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 17 946 - -
Glsi08g1377 980 Gene3D Phosphorylase Kinase; domain 1 644 752 - -
Glsi08g1377 980 SUPERFAMILY L domain-like 43 390 - -
Glsi08g1377 980 Gene3D Ribonuclease Inhibitor 279 352 IPR032675 -
Glsi08g1377 980 FunFam Leucine-rich repeat receptor-like protein kinase TDR 278 594 - -
Glsi08g1377 980 Gene3D Ribonuclease Inhibitor 505 582 IPR032675 -
Glsi08g1377 980 Gene3D Ribonuclease Inhibitor 355 504 IPR032675 -
Glsi08g1377 980 FunFam Receptor-like protein kinase HAIKU2 643 752 - -
Glsi08g1377 980 ProSiteProfiles Protein kinase domain profile. 660 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1377 980 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 753 961 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1377 Glsi-ChrGlsi08 10057068 10060120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1377 9 962 Receptor kinase-like Gene Family AT1G09970 63.750 0.0 1211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi08g1377 Pkinase 1.4e-43 CL0016