Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1370 ATGGGTACTGGTTGGAGAAGAGCCTTTTGCACTCGCGACCCAGAATCCACAATATCGGATAAGCAACAAAGAAGCCCAAGTTCTAGCCCCAGCCCCAGAAGCTGCGTTAGATTGGGTTTTCTCTCCGGTGGTAGCAACGCCTCCACTCCACGCTTGCAGCAGCAGCAACATCAACAGTCTCAACCCGTATCGAGTCCGAGCTTGCGTTGCCGAACAATTGCAGAAGCAGCTCAAACAGCGACCGCTAATGATAGCCCGAGACTTCAAAGCAAGAACACTCCCAAGGCAACCAAGTCCCCCAACTCGCTATCGAGCTCAAATCCAACTTCTCCTCGCTCACCTTTGAAGTTGTCTCTCTTCAAAAACAGCTTCAAATTCAGAAGTAGTTGTGGAATCTGTTTGAATAGCGTGAAGACGGGTCAGGGGACGGCCATTTACACTGCCGAATGTTCTCACGCTTTCCATTTTCCTTGTATCGCTGCTCATGTACGCAAGCACGGCAGCCTTGTCTGCCCCGTCTGTAACGCCACCTGGAAAGACGTACCTTTACTCACCTTGCACAAGAACCTCGCCTCAGAATCCTCGGAGAAGAACGACGTCGCTGTAAGTAGCATCGAAAAACCAAATGCCGGCGACCAAAATAGAACAGAAAACCCGTCCCCAGTTTTCAAAACCGAGCACGTTGAACCACCACCCCACCAACAGCCAAAGCATTCCGATTCAATCAGGTCCTACGATGATGACGAGCCTCTGCTGTCTCCTGCCTCAGGAGGCCGAATCATTCCCATCCCTGAAGCTGACGAAAACGGCGAAGAAGACGACGGCGACGTTGAGGAGTTCCAGGGCTTTTTCGTCAATTCTAAATCTTCATCCTCAAACAAATCCTACTCCGATGACTTCGGAACAAACGACAGAGATTCCAGAAATGTTCAGGTTAAGCTGGTTCCTGAGTGTGCTATAGTATCGGTCTCCCGGAACCACGAGACCTGTGCTTTGGTTTTAAGAGTGAAGGCTCCACCGCCGCCCCCACTTCCACCACTGTCTCGTAACAGCAACAGTGCTACACCACTTCTGGATCCATCTCAACGGGCTCCCATAGATCTTGTTACGGTTCTTGATGTGAGCGGTAGCATGACTGGTGCCAAGCTTCACATGCTAAAGCGCGCGATGCGTTTGGTTATTTCCTCTCTTGGTCCGGCTGATAGGCTCTCCATAGTGGCTTTCTCGGCTACTGCCAAAAGATTGTTACCTTTGAAAAGAATGTCGACTCAAGGTCAGCGCGTGGCTCGGCGCATCATTGACCGGCTTGTCTGTGGTCAAGGGACTTGCGTGGGCGATGCTTTGAGGAAAGCCACCAAAGTGCTCGAGGACCGGAGGGAGAGGAACCCGGTCGCCAGTGTCATGCTCTTATCGGACGGACAAGATGAGAGAGTTCAAACTAGCAACAACACCAATCAACGAAAAGGTTCGACCTACGTGTCTTCTACCCGTTTCGCCCATATCGAGATCCCGGTTCATGCTTTTGGCTTTGGGTTTGGACAGAAAGGCAGCTACAGCCATGAGCCGGCTGAGGATGCATTTGCTAAGTGCGTTGGTGGCTTATTGAGTGTGGTGGTGCAGGACTTGGTAATTCAGCTGGGCTTTCAGTCGGGTTCGGCGCCGTTTGAAATTAGCGCCATCTACTCATGCAGTGGGAGGCCCACGGTGCTGAGCTCAGGGTCCGTGCGGCTCGGCGATTTGTACGCGGAAGAAGAGAGGGAGTTACTGGTGGAGTTGAGGATTCCTACGTCGGCATTGAGGACCCGCCACGTGATGACGGTACGGAGCCTTTATAAGGACCCTGCCACTCAGGAGGTTGTATACGGTAGGGAACAGGGCCTTGTGGTACCTCCCCCTCAGAGTGGCCGATGTTCCGGTGCTAGAATTGAAAGGTTGAGGAATCTTTTCGTAACAACCAGAGCCATAGCCGAATCTCGGAGATTGGTGGAGCACAACGACTTCACAACTGCGCATGATTTGCTTGCTTCGGCGCAAGCTCTTTTGATGCAATCCAGCTCGATTTCGGCTGATGAGTTCATACGTGGCTTGGAAGCTGAGCTGGCAGCGCTACATTGGCGTAGACAGCGTCAGACGGAACAACTTCAGCAACAGCAGATGATGGTGATGCAACGGAGGAGAGGGAACGGAAGGGAGATGTTCTTGGTGGACGAAAATGGGGAACCGCTCACGCCAACATCGGCTTGGAGAGCCGCTGAGAAGCTGGCTAAGATGGCCATGATGAAAAAGTCATTGAATAGAGTCAGCGACTTGCACGGCTTCGAAAACGCTAGGTTTTAA 2337 0.5212 MGTGWRRAFCTRDPESTISDKQQRSPSSSPSPRSCVRLGFLSGGSNASTPRLQQQQHQQSQPVSSPSLRCRTIAEAAQTATANDSPRLQSKNTPKATKSPNSLSSSNPTSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGTAIYTAECSHAFHFPCIAAHVRKHGSLVCPVCNATWKDVPLLTLHKNLASESSEKNDVAVSSIEKPNAGDQNRTENPSPVFKTEHVEPPPHQQPKHSDSIRSYDDDEPLLSPASGGRIIPIPEADENGEEDDGDVEEFQGFFVNSKSSSSNKSYSDDFGTNDRDSRNVQVKLVPECAIVSVSRNHETCALVLRVKAPPPPPLPPLSRNSNSATPLLDPSQRAPIDLVTVLDVSGSMTGAKLHMLKRAMRLVISSLGPADRLSIVAFSATAKRLLPLKRMSTQGQRVARRIIDRLVCGQGTCVGDALRKATKVLEDRRERNPVASVMLLSDGQDERVQTSNNTNQRKGSTYVSSTRFAHIEIPVHAFGFGFGQKGSYSHEPAEDAFAKCVGGLLSVVVQDLVIQLGFQSGSAPFEISAIYSCSGRPTVLSSGSVRLGDLYAEEERELLVELRIPTSALRTRHVMTVRSLYKDPATQEVVYGREQGLVVPPPQSGRCSGARIERLRNLFVTTRAIAESRRLVEHNDFTTAHDLLASAQALLMQSSSISADEFIRGLEAELAALHWRRQRQTEQLQQQQMMVMQRRRGNGREMFLVDENGEPLTPTSAWRAAEKLAKMAMMKKSLNRVSDLHGFENARF 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1370 778 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 129 773 - -
Glsi08g1370 778 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 241 IPR013083 -
Glsi08g1370 778 FunFam Probable E3 ubiquitin-protein ligase EDA40 367 534 - -
Glsi08g1370 778 MobiDBLite consensus disorder prediction 340 359 - -
Glsi08g1370 778 Coils Coil 693 713 - -
Glsi08g1370 778 MobiDBLite consensus disorder prediction 283 298 - -
Glsi08g1370 778 MobiDBLite consensus disorder prediction 20 114 - -
Glsi08g1370 778 SMART VWA_4 365 548 IPR002035 -
Glsi08g1370 778 MobiDBLite consensus disorder prediction 230 247 - -
Glsi08g1370 778 MobiDBLite consensus disorder prediction 195 306 - -
Glsi08g1370 778 Pfam von Willebrand factor type A domain 368 474 IPR002035 -
Glsi08g1370 778 ProSiteProfiles Zinc finger RING-type profile. 130 175 IPR001841 -
Glsi08g1370 778 CDD vWA_C3HC4_type 366 539 - -
Glsi08g1370 778 Pfam RING-like zinc finger 130 159 IPR001841 -
Glsi08g1370 778 Gene3D von Willebrand factor, type A domain 367 531 IPR036465 -
Glsi08g1370 778 SUPERFAMILY vWA-like 365 513 IPR036465 -
Glsi08g1370 778 ProSiteProfiles VWFA domain profile. 367 511 IPR002035 -
Glsi08g1370 778 CDD RING-H2_WAVH2 127 180 - -
Glsi08g1370 778 MobiDBLite consensus disorder prediction 1 114 - -
Glsi08g1370 778 SUPERFAMILY RING/U-box 123 180 - -
Glsi08g1370 778 SMART ring_2 130 174 IPR001841 -
Glsi08g1370 778 MobiDBLite consensus disorder prediction 195 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1370 Glsi-ChrGlsi08 9988084 9990552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1370 122 274 C3H Transcription Factor Family AT3G03550 26.087 9.32e-06 46.6