Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1366 ATGGAACTCTGTGAACATGATTTCTTGGAAGAATTACTAGCTCTAAGAAGGGAAACATGGGACACCACCATTCCAACAGAAGAAAACCAGCTCTTCTCTAATGGCTGGAGTTTTGATTGTTTCGATCAAAACTCCGCAGCTTTTCTTCCAAATTCTTCCTTTCAAGAAATTCCTCAAAGTTACAACAACTACACCTTCGATGAAATCTGTAGTTCCTCACTTGATGAATTCTCTGCGCCACAGAGTATTGATTCATCCTATAACATTCTTGATACTCCACTCAATACCCCTCCATTTTTGTGTCAAGAAGATTACCCATTTTCCATGGTGGAAGAAGAGGGTTTGCTCGGGGAAGAACTTCAGAGTTTGAACCTGCAAACCCCATGTAAGATTGAGCCAAACCAATCCCCTGAAATGCCAGTTTTCAACATGGGTCCGTGTTTGGAAAGAAAGAATCGAGCAAAGAAACTGCAGGGGCAGCCCTCCAAGAATCTCATGGCCGAGAGAAGAAGAAGAAAGAGATTAAACGATCGCCTCTCAATGCTAAGATCAATTGTCCCCAAGATAAGTAAGATGGACAGAACATCCATACTTGGAGACACTATTGATTACATGAAAGAGCTCCTGGAGAAGATTAACCAATTGCAACAAGAAATAGAATTAGATTCAAACATGGCGGGCATTTTTAAGGAAGCAAAGCAAATCTTGGTGAGAAATTCACCCAAGTTTGATGTGGAGAGGAGGAATTCGGACACCCAGGTTGAAATTTTCTGTTCAGGGAAGCCAGGCTTGTTGCAATCTACTGTGGACACCCTGGAAGCATTAGGTCTGGAGATTCAACAGTGTGTTATAAGCTGTTTCAATGATTTTACAGTGCAGGCTTCTTGCTCAGAGGAACTGGAACAGAGGACAATACTGAGTTCTGAAGACATAAAGCAAGCGTTGTTCAGAAGCGCAGGATATGGAGGAAGATGTTTGTGA 981 0.421 MELCEHDFLEELLALRRETWDTTIPTEENQLFSNGWSFDCFDQNSAAFLPNSSFQEIPQSYNNYTFDEICSSSLDEFSAPQSIDSSYNILDTPLNTPPFLCQEDYPFSMVEEEGLLGEELQSLNLQTPCKIEPNQSPEMPVFNMGPCLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKINQLQQEIELDSNMAGIFKEAKQILVRNSPKFDVERRNSDTQVEIFCSGKPGLLQSTVDTLEALGLEIQQCVISCFNDFTVQASCSEELEQRTILSSEDIKQALFRSAGYGGRCL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1366 326 CDD ACT_UUR-ACR-like 252 315 - -
Glsi08g1366 326 SMART finulus 165 214 IPR011598 GO:0046983
Glsi08g1366 326 Pfam Helix-loop-helix DNA-binding domain 165 208 IPR011598 GO:0046983
Glsi08g1366 326 Gene3D - 149 224 IPR036638 GO:0046983
Glsi08g1366 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Glsi08g1366 326 Coils Coil 198 225 - -
Glsi08g1366 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 221 IPR036638 GO:0046983
Glsi08g1366 326 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 34 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1366 Glsi-ChrGlsi08 9963425 9964716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1366 51 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 50.000 4.75e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi08g1366 HLH 6.8e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1366 08 9963425 9964716 Glsi08g1366 08 9963425 9964716 ECH