Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1357 ATGGGGAGAGGGAAGATCGTGATTAGGAGGATCGACAATTCGACGAGCAGGCAAGTGACGTTCTCGAAACGAAGGAACGGTTTGCTGAAGAAGGCGAAGGAGCTAGCAATCCTTTGCGACGCTGAGGTAGGAGTTATGATCTTCTCCAGCACTAGCAAGCTCTACGATTTTGCCAGCACCAGCATGAAATCAGTGATTGATCGATACAACAAAACAAAAGATCATCATCTTGGGAGTTCAACCACTGAAGTGAAGTTTTGGCAAAGGGAGGCAACAATGTTAAGGCAACAATTCCAAAACTTGCAAGAAAGTCACCGGCAAATGATGGGAGAAGAACTTTCAGGTTTGACTGTCAAAGAATTACAGAGCTTGGAGAACCAACTGGAAATTAGCCTCAGGGGTGTGCGTATGAAAAAGGACCAACTTTTAATGGATGAAATACAGGAACTAAACCGAAAGGGAAACCTTATACACCAAGAAAATGTGGAACTGCACAAGAAGGTAAACCTAATTCGTCAAGAAAACATTGAATTTAAAAAGAAGGTCTATGAAACAAGTGATGGGAATGGAACAAACAGAAATTCTGTTCTCACAAATGGTCTAGGAATAGGAGAGGACTTGCAGATGCCTATAAATCTCCAGCTCAGCCAGCCACAGCAGCAAAACTACAAGACACCTTCAGGAGCTACAAAATTGGGCAGATTACAACTGCATTGA 717 0.4282 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTSKLYDFASTSMKSVIDRYNKTKDHHLGSSTTEVKFWQREATMLRQQFQNLQESHRQMMGEELSGLTVKELQSLENQLEISLRGVRMKKDQLLMDEIQELNRKGNLIHQENVELHKKVNLIRQENIEFKKKVYETSDGNGTNRNSVLTNGLGIGEDLQMPINLQLSQPQQQNYKTPSGATKLGRLQLH 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1357 238 Pfam K-box region 80 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi08g1357 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Glsi08g1357 238 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Glsi08g1357 238 Coils Coil 84 104 - -
Glsi08g1357 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi08g1357 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi08g1357 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi08g1357 238 MobiDBLite consensus disorder prediction 217 238 - -
Glsi08g1357 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi08g1357 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 199 - -
Glsi08g1357 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi08g1357 238 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Glsi08g1357 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi08g1357 238 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi08g1357 238 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1357 Glsi-ChrGlsi08 9882272 9901753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1357 1 229 MADS-box Gene Family AT2G22630 58.874 1.79e-92 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi08g1357 K-box 2.7e-28 No_clan