Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1354 ATGTCGACCCCAGGGGTACGGTTGCACATTCAAGGTCCTCATGTGGTGATGGATAATGGTATACTCCAAGTTACCTTATCAAACCCCGATGGAATTGTCACTGGAATACGATATAATGGTGTTGACAATTTGCTTGAAGTTCTCAACAATGAATCTAATAGAGGGTACTGGGACCTTGTTTGGAGTGCGCCAGGAAGCAAAGGAATCTTTGATGTGATTAAAGGAACGTGTTTTAAAATTATAGTTCACAATGAGGAGCAGGTGGAGATTTCGTTCACAAGAATGTGGGACCCTTCTCTGGAGGGAAAGTTTGTTCCCTTAAATATTGACAAAAGATTCATAATGCTCCGTGGTTCGTCAGGCTTCTACTCATATGCAGTATATGAGCACTTAAATGGATGGCCAGATTTTGATATTGGTGAAACGAGGATCACTTTCAAGCTAAGAAAAGACAAGTTTCATTACATGGCTATAGCAGACAATAGAAGAAGAATTATGCCTTTTCCAGATGATCGGTTACCAGGAAGATGCCAATCCTTGGCCTACCCAGAAGCTGCGCTACTAGTCAATCCCAAGGATGAACAACTCAAAGGCGAGGTGGATGACAAATATCAGTATTCATGTGAAAATATAGATAATCGAGTCCATGGGTGGATTTCTTTCAATCCACCAGTGGGATTCTGGCAGATCACACCTAGTGATGAGTTCCGTTCTGGTGGACCCCTAAAACAGAATTTGACCTCACATGTTGGCCCTACCACGCTTGCAATGTTTCTTAGTTCTCACTATGCGGGACAAGATTTGGTTCCCAAATTTAGAGGTGGTGAACCATGGAAGAAGGTTTTTGGTCCTGTGTTTATTTATCTGAATTCTGGACCAGTTGGTGATGACCCACTTTGGCTATGGGAGGATGCAAAAATACAGATGATGACTGAAGTCCAAAGTTGGCCATACTTTTTCCCAGCTTCAGAGGATTTCTTGAAGTCAGACCAACGTGGTAACGTTAGTGGTAGACTACTTGTCTTAGACAGATACATCAGCACAGATTTGATACCAGCAAACGGTGCTTATGTTGGTCTCGCCCCACCAGGAGATGTGGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCACAGCAGATGAGAATGGTTTTTTTACTATAAGGAGCATACGTGCAGGCGACTATAACCTTTATGCTTGGGTCCCTGGTTTTGTTGGGGATTATAGATTTGATGATTTTATGAAGATAACTTCAGGTTCTTGTATCGAATTGGGTGAACTTGTTTATGAGCCCCCAAGGGATGGACCAACATTGTGGGAAATAGGCGTCCCTGATAGATCTGCTGCAGAATTTTATGTTCCTGATCCCAATCCACAGTACATTAATAAGCTTTTTATCAACCATCCTGACAGGTTCAGACAGTACGGATTGTGGGACAGGTATACAGAATTGTATCCTGATGGAGATTTGATATACACAATTGGTGTTAGTGATTATGCTAAGGATTGGTTTTTTGCGCAGGTTACCAGAAAAAAAGAGGATAACAGTCATCAAGGAACAACTTGGCAAATCAAGTTTGAACTCAATAATGTGGTTAAAGAAAGTACATATAAAATGAGAGTGGCACTTGCATCTGCAACATTAGCCGAATTGCAGATTCGAATAAATGATCCAAATGCAAAGCGCCCTCTATTTACCAGTGGATTGATAGGAAGGGACAACTCAATTGCAAGACATGGAATTCATGGGCTCTACTGGCTGTACAATGTGAATGTACCAGGTGCTCTTCTTGTTGATGGCACAAATACTATATTTTTAGCACAACCAAGATGCACCAGCCCTTTTCAGGGGATCATGTATGATTATATTCGTTTGGAAGGCCCTCCTTGTTCTTAG 1905 0.4184 MSTPGVRLHIQGPHVVMDNGILQVTLSNPDGIVTGIRYNGVDNLLEVLNNESNRGYWDLVWSAPGSKGIFDVIKGTCFKIIVHNEEQVEISFTRMWDPSLEGKFVPLNIDKRFIMLRGSSGFYSYAVYEHLNGWPDFDIGETRITFKLRKDKFHYMAIADNRRRIMPFPDDRLPGRCQSLAYPEAALLVNPKDEQLKGEVDDKYQYSCENIDNRVHGWISFNPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSSHYAGQDLVPKFRGGEPWKKVFGPVFIYLNSGPVGDDPLWLWEDAKIQMMTEVQSWPYFFPASEDFLKSDQRGNVSGRLLVLDRYISTDLIPANGAYVGLAPPGDVGSWQRECKDYQFWTTADENGFFTIRSIRAGDYNLYAWVPGFVGDYRFDDFMKITSGSCIELGELVYEPPRDGPTLWEIGVPDRSAAEFYVPDPNPQYINKLFINHPDRFRQYGLWDRYTELYPDGDLIYTIGVSDYAKDWFFAQVTRKKEDNSHQGTTWQIKFELNNVVKESTYKMRVALASATLAELQIRINDPNAKRPLFTSGLIGRDNSIARHGIHGLYWLYNVNVPGALLVDGTNTIFLAQPRCTSPFQGIMYDYIRLEGPPCS 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1354 634 Pfam Rhamnogalacturonate lyase family 11 200 IPR010325 -
Glsi08g1354 634 Gene3D - 328 421 - -
Glsi08g1354 634 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Glsi08g1354 634 CDD RGL4_N 6 292 - -
Glsi08g1354 634 Gene3D - 8 305 IPR014718 GO:0030246
Glsi08g1354 634 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
Glsi08g1354 634 SUPERFAMILY Galactose mutarotase-like 14 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
Glsi08g1354 634 Pfam Polysaccharide lyase family 4, domain II 354 426 IPR029413 -
Glsi08g1354 634 CDD RGL4_C 442 629 - -
Glsi08g1354 634 Gene3D - 438 629 - -
Glsi08g1354 634 CDD RGL4_M 331 430 IPR029413 -
Glsi08g1354 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 13 632 - -
Glsi08g1354 634 FunFam Rhamnogalacturonate lyase B 328 427 - -
Glsi08g1354 634 SUPERFAMILY Starch-binding domain-like 330 410 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1354 Glsi-ChrGlsi08 9862835 9868049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1354 1 632 Polysaccharide Lyase AT1G09910 71.044 0.0 966