Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1353 ATGGCGCCCACAGGAGTGCAACTGAATGTTCAAGATCGTCATGTGGTGATGGACAATGGCATACTAAGAGTCACCTTATCAAATCCTGAGGGAATAGTCACAGGAATAGAATATAATGGCATCGACAACTTGCTTGAAGTTCTGAATGAAGAATCTAATAGAGGGTACTGGGACCTTGTTTGGAGCTCACCAGCAAGTACTGGAACCGCTGGTAGATTTGATGTGATAAAGGGTACTAGTTTCAGTGTAATAGTGGAAAGCGAGGAACAAGTTGAGATATCCTTCACAAGAACATGGGACGCCTCCCTTGAGGGCAAGCTGGTGCCCTTAAATATTGATAAAAGGTTCATAATGTGTCGTGGTTCTTCTGGCTTCTACTCCTATGCTATTTATGAGCACTTAGAGGACTGGCCCGCTTTTAACATTGACGAAACCAGAATTGCTTTCAAGCTCAGGAAAGACAATTTTCATTACATGGCAATGGCAGATAATAGACAAAGAAACATGCCTCTCCCAGACGACCGATTACCACCTAGAGGCCAAGCCCTTGCCTACCCTGAGGCTGTTCTACTTGTCAATCCCATTGAACCAGAAATTAAAGGGGAGGTGGATGACAAGTACCAATATTCATGCGACAACAAAGATAGCAAGGTGCATGGATGGATCTGCATGGACCCAGCAGTGGGATTCTGGCTAATAACTCCCAGCAATGAGTTCCGATCTGGTGGACCGGTCAAACAGAACTTAACTTCTCACGTCGGACCTACTACGCTTGCGGTGTTTCTAAGTCCTCATTATAGCGGAGAAGATCTGGTGCCAAAATTCAAAGCTGGTGAGGCATGGAAGAAAGTTTTCGGTCCAGTTTTCATCTATTTGAATTCTTCATATGATGGAGACGACCCACTTGAGCTATGGGAAGACGCTAAACTGCAGATGTCGATAGAAGTTCAAAGCTGGCCCTACAGTTTTCCTGCTTCAGAAGATTACCCAAAGTGGGACCAACGTGGCAATGTCAGTGGCAGGCTACTCGTCCGAGACAGGTATATTAGCGATGACTATATCTCGGCAAAAGGTGCTTACGTTGGCTTGGCTCCACCGGGAGACGTTGGATCATGGCAAAGAGAATGCAAGAATTATCAGTTCTGGACAAAAGCAGACGATGATGGGTATTTCTCCATCAGTAATATACGCCCCGGTGACTATAATCTTTACGCATGGGTGCCTGGTTTTGTTGGTGACTATAGATATGATGAAAATATGAACATAACCGAAGGCAGTGACATAGACGTAGGTGATCTTGTACATGAACCCCCAAGAGATGGTCCAACATTGTGGGAAATAGGCATCCCTGATCGTTCAGCTGCTGAGTTCTATGTTCCTGATCCGAACCCCAAATATATCAACAAGCTCTACGTTAATCATCCTGACAAGTTTAGGCAGTATGGGTTATGGGAAAGATATGCAGAGTTATACCCTGACCAAGACTTGATTTACACAGTCGGTGTTAGTGACTACACCAAAGATTGGTTCTTCGCTCAAGTTACCAGGAAGAAAGATGACAATACATACCAAGGAACCACATGGCAAATCCAGTTTAAACTTGACAATGTGGAAAAGAGCAGTACCTATAAACTGCGAGTGGCTTTGGCATCAGCAACATTTTCTGAACTGCAGGTTCGAGTTAACGATCCAAAGGCAAATCGTCCTCTGTTTTCAAGTGGATTAATTGGAAAGGATAACTCGATTGCTAGGCATGGAATTCATGGACTGTATTGGTTTTACAGTGTGAACATATATGGTGCTCGACTAGTGGAAGGAGATAATACTATCTTTTTGACACAATCAAGAGGCAATAGCCCATTTCAGGGCATTATGTATGATTATATTCGTTTAGAAGGTCCCTCGTCCTCTAGTTCCAGTGAGAAAATATGA 1932 0.4384 MAPTGVQLNVQDRHVVMDNGILRVTLSNPEGIVTGIEYNGIDNLLEVLNEESNRGYWDLVWSSPASTGTAGRFDVIKGTSFSVIVESEEQVEISFTRTWDASLEGKLVPLNIDKRFIMCRGSSGFYSYAIYEHLEDWPAFNIDETRIAFKLRKDNFHYMAMADNRQRNMPLPDDRLPPRGQALAYPEAVLLVNPIEPEIKGEVDDKYQYSCDNKDSKVHGWICMDPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFLSPHYSGEDLVPKFKAGEAWKKVFGPVFIYLNSSYDGDDPLELWEDAKLQMSIEVQSWPYSFPASEDYPKWDQRGNVSGRLLVRDRYISDDYISAKGAYVGLAPPGDVGSWQRECKNYQFWTKADDDGYFSISNIRPGDYNLYAWVPGFVGDYRYDENMNITEGSDIDVGDLVHEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGLWERYAELYPDQDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIQFKLDNVEKSSTYKLRVALASATFSELQVRVNDPKANRPLFSSGLIGKDNSIARHGIHGLYWFYSVNIYGARLVEGDNTIFLTQSRGNSPFQGIMYDYIRLEGPSSSSSSEKI 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1353 643 SUPERFAMILY Galactose mutarotase-like 12 295 IPR011013 GO:0003824|GO:0005975|GO:0030246
Glsi08g1353 643 FunFam Rhamnogalacturonate lyase B 331 430 - -
Glsi08g1353 643 Gene3D - 441 632 - -
Glsi08g1353 643 SUPERFAMILY Galactose-binding domain-like 440 632 IPR008979 -
Glsi08g1353 643 Gene3D - 5 311 IPR014718 GO:0030246
Glsi08g1353 643 CDD RGL4_C 445 632 - -
Glsi08g1353 643 SUPERFAMILY Starch-binding domain-like 333 431 IPR013784 GO:0030246
Glsi08g1353 643 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 635 - -
Glsi08g1353 643 Pfam Polysaccharide lyase family 4, domain II 357 429 IPR029413 -
Glsi08g1353 643 Gene3D - 333 430 - -
Glsi08g1353 643 CDD RGL4_M 334 433 IPR029413 -
Glsi08g1353 643 Pfam Polysaccharide lyase family 4, domain III 443 631 IPR029411 -
Glsi08g1353 643 Pfam Rhamnogalacturonate lyase family 6 203 IPR010325 -
Glsi08g1353 643 CDD RGL4_N 10 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1353 Glsi-ChrGlsi08 9857576 9861656 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1353 1 635 Polysaccharide Lyase AT1G09890 72.998 0.0 979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1353 08 9857576 9861656 Glsi08g1353 08 9857576 9861656 ECH