Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1352 ATGATTTTCACCAAGCATTTTTTGTTCTTGATGCAGCTGTTCATTCTGGTTCTGGGTTATGTTCCTTATCCAGGGGTGCGATTGGATGTTCAAGATAAGCATGTGGTAATGGATAATGGCATAGTCCAGGTCACTTTATCAAATCCTGAAGGAATAGTCACCGGAATCCAATATAATGGCATCGACAATTTACTTGAAGTTCTGAACCAGGAATTTGACAGAGGGTACTGGGATCTTGTATGGGACAAGACCGGTAAAAAGGGAACAAAGGGGACATTCGATAGGATGGAAGCCACAAATTTTACGGTAGTAGTTGAAACTGAAGAACAATTAGAGTTGTCATTCACCAGAACGTGGCTTCCTTCCCTCGAGGGAAAGCTTCCGCCCCTCAATATTGATAAAAGGTTTATAATGCTTCGTGGTTCTTCGGGCTTCTACACCTATGCCATCTACGAGCATTTGAAGGAATGGCCTGCCTTCAATCTTGACAATACTAGGATTGCATTCAAGCTTAGAAAAGACAAGTTCCATTACATGGTTATAGCAGACGACAGACAAAGATTTATGCCACTGCCTGACGACCGGTCATCAGAAAGAGGCCAAGTTCTTGCCTACCCAGAGGCTGTTCTGCTCCTCAATCCTGTGGAGCCGGAGTTCAAAGGAGAGGTGGATGACAAGTATCAGTACTCATCCGAGAGCCGCCACAGTCGGGTTCATGGCTGGGTATGCATTGATCCATCTGTGGGGTTCTGGCAAATTACACCCAGCTTTGAGTTCCGATCTGCTGGGCCCCTGAAGCAATACCTTACTTCCCATGTGGGCCCTACCACACTCACGGTATTTCATAGCACGCACTATTCAGGAGCAGATTTAGTAATGAAATTTGGGACCGATGAGCCATGGAAGAAAGTCTTTGGGCCCATATTTATATACCTTAATTCTTTGTCAAATGGTGAAAGCCCGATTATGCTCTGGGAAGACGCTAAACAACAGATGGTCAATGAAATTGAAAGTTGGCCCTATGCATTTCCAGCTTCAGAGGACTTTCCCTCATCTGACCAACGGGGAAAGCTTCAAGGTAGATTACTTGTCCGAGACTGGTATGTTAATGATGGGTGCATCCCAGCATGTGGTGCTTATGTGGGATTAGCTGCCATAGGGGATGCTGGATCTTGGCAGAGAGAATCCAAGGGTTATCAATTTTGGACCATTACGGATGATAAAGGTTACTTCTCAATAATTGACATACGGGCTGGGGACTATAATCTTTACTCCTGGGTCACTGGATTTATTGGTGATTATCGATATGACAATGTCATTACCATAACCTCAGGTTGTGAAGTTGATGTGGGAGAACTTTTATATGAGACTCCAAGAGATGGCCCTACGTTGTGGGAAATAGGCATTCCTGATCGCTCGGCTGCTGAATTCTATATCCCATATCCAAATCCAAAGTACATTAACAAGCTTTATATCAATCATCCAGATAGGTTTAGGCAATATGGATTATGGGAGAGGTATGCAGAATTGTATCCAAATGAAGACTTGGTCTACACCATAGGCACCAGTGACTACAGAGAAGATTGGTTCTTTGCTCAAGTTAACAGGAAGAAAGATAATAACACATACCAAGGAGCCACATGGCAAATTAAATTCACACTTGATGATGTAAATACAGATGGAACCTACAAATTGCGATTGGCTCTGGCATCTGTGCATTCTGCTGAGCTACAAGTATATTACTTCGTTCGGATAAACAACTCAGAAGCAAACCCACCCTTGTTCTCAAGTGGAGTGATTGGAAAGGAGAATACCATAGCTAGACATGGAATTCATGGTCTTTATTGGCTATACAGCATTGATGTCCGAGGCACTCTTCTAGTGCAAGGGAATAATACCATCTTTCTAACACAGGCAAGAAGCACAAGTCCCTTTCAAGGGATTTTGTATGATTATATTCGCTTAGAAGGGCCCTCTTCTATATCTTATAAAGATCATAACTAG 2004 0.4311 MIFTKHFLFLMQLFILVLGYVPYPGVRLDVQDKHVVMDNGIVQVTLSNPEGIVTGIQYNGIDNLLEVLNQEFDRGYWDLVWDKTGKKGTKGTFDRMEATNFTVVVETEEQLELSFTRTWLPSLEGKLPPLNIDKRFIMLRGSSGFYTYAIYEHLKEWPAFNLDNTRIAFKLRKDKFHYMVIADDRQRFMPLPDDRSSERGQVLAYPEAVLLLNPVEPEFKGEVDDKYQYSSESRHSRVHGWVCIDPSVGFWQITPSFEFRSAGPLKQYLTSHVGPTTLTVFHSTHYSGADLVMKFGTDEPWKKVFGPIFIYLNSLSNGESPIMLWEDAKQQMVNEIESWPYAFPASEDFPSSDQRGKLQGRLLVRDWYVNDGCIPACGAYVGLAAIGDAGSWQRESKGYQFWTITDDKGYFSIIDIRAGDYNLYSWVTGFIGDYRYDNVITITSGCEVDVGELLYETPRDGPTLWEIGIPDRSAAEFYIPYPNPKYINKLYINHPDRFRQYGLWERYAELYPNEDLVYTIGTSDYREDWFFAQVNRKKDNNTYQGATWQIKFTLDDVNTDGTYKLRLALASVHSAELQVYYFVRINNSEANPPLFSSGVIGKENTIARHGIHGLYWLYSIDVRGTLLVQGNNTIFLTQARSTSPFQGILYDYIRLEGPSSISYKDHN 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1352 667 CDD RGL4_N 26 314 - -
Glsi08g1352 667 Gene3D - 27 307 IPR014718 GO:0030246
Glsi08g1352 667 Pfam Rhamnogalacturonate lyase family 28 223 IPR010325 -
Glsi08g1352 667 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 31 659 - -
Glsi08g1352 667 SUPERFAMILY Starch-binding domain-like 354 452 IPR013784 GO:0030246
Glsi08g1352 667 Gene3D - 461 656 - -
Glsi08g1352 667 Pfam Polysaccharide lyase family 4, domain III 463 655 IPR029411 -
Glsi08g1352 667 FunFam Rhamnogalacturonate lyase B 351 450 - -
Glsi08g1352 667 CDD RGL4_C 465 656 - -
Glsi08g1352 667 SUPERFAMILY Galactose-binding domain-like 460 656 IPR008979 -
Glsi08g1352 667 Gene3D - 352 450 - -
Glsi08g1352 667 Pfam Polysaccharide lyase family 4, domain II 378 449 IPR029413 -
Glsi08g1352 667 CDD RGL4_M 354 453 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1352 Glsi-ChrGlsi08 9850712 9855624 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1352 26 659 Polysaccharide Lyase AT1G09890 66.771 0.0 883