Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1351 ATGACTTGTGACAATAGTCATTTGAAAGAGGTCTCAGAGTCTGATGATAGTTTGCATCTTGTAAAGAAGCTCCGCCATGTCATCACAAGCAGTGCAGTTGCAAATAAAACACAGTCATGTAAGGCATTGTTTTCTTCTTTCATTCTAGAGGTGGTGATGGACAATGGCATACTGCGAGTGTATTTATCCAAACCGGGAGGAGTTGTCACTAGAATACAATATAATGGCATTGATAATCTGCTTGAAGTTCTTAACGAACGAGATAATAGAAGTTATTGGGACGTTGTTTGGAGTGAAGCAGGCAGTACAGGAACAACTGGGACATTTGAGCGGGTCGTGGGAACAAGATTTACAGTTACAGTGGAAACTGAGGAACAGGTGGAGATCTCGTTTACTAGAATGTGGGATCCATCTCTGAAGGGAAAGCTTTCACCACTGAATATAGACAAAAGGTATGTGATGCTTCGTAATTCCTCAGGCTTCTACTCATACGCCATTGTTGAACACCTAAAAGAATGGCCTGCTTTCAACATACCCCAGATCAGGATCGTTTTCAAGCTACGAAAAGACAAGTACCATTACATGGCTGTAGCGGATAATAGGCAAAGATTCATGCCTCTTCCAGACGATAGATTACCTGGAAGGGGAGATGAACTAGCCACCCCTGAAGCAGTTTTGCTCGTCAATCCCGTGGAGCCAGAGTTCAAGGGAGAGGTGGATGACAAGTACCAATACTCAAGCGACAACAAAGATCTCAAGGTGCATGGGTGGATAAGCACCGGACTCGAAACTGCACCAGCCATGGGATTCTGGGTGATCATACCCAGCAATGAATTCCGATCAGGCGGCCCCGTTAAACAGAACCTCACCTCCCATGTGGGCCCCATCAGCCTTGCAATGTTTCTCAGTGCTCATTACGCTGGCGAGGATCTAGTTCTGAAACTCCAACCGAACGAGCCATGGAAGAAAGTTTTGGGGCCAATCTTCGTCTATCTGAACACTTCGTTGGATGATCATTGCTCACTCTGGGAGGATGCCAAGGATCAGATGACGAAGGAAGTCCAAAGTTGGCCTTATGATTTTCCAGCCTCGGAGGATTATCAGAAGTCTAACCAACGAGGCAGTGTTTGTGGCACATTACAAGTTCGAGACAGGTGCCTAAGTGACGATTACATATCGGCCCAAGGAGCATATGTAGGACTTGCACCACCGGGAGACGCTGGATCATGGCAAAGAGAATGCAAGGGATACCAATTCTGGACTAGAGCAAACGAGGAAGGCTACTTCTCAATTGATAATATACGTAGTGGAGATTATAATCTCTATGCATGGGTTCCCGGCTTCATTGGAGAATACTGGAACAATGTTGTCCTTACCATCACCCCAGGGTGCGAAATCTATGTGGGCGAAATTGTTTATGAGCCACCAAGAGATGGTCCAACATTATGGGAGATAGGCATCCCTGATCGCTCTGCGGCTGAATTCTATGTTCCTGATCCTAATCCAAATTACATAAACAAGCTTTATGTCAACCATCCAGACAAGTTTAGGCAGTATGGCTTATGGGAAAGATATGCAGATCTATACCCAAATGAAGATTTGATATATACAGTTGGTGTTAGTGACTATGGGAAAGATTGGTTCTTTGCACAAGTGACGAGGAAGAAAGATGATGGCACTTACCAAGGAACTACGTGGCAAATTAAGTTCAACCTTGATAATGTGGTGGGAAGTGGAACCTACAACCTACGATTGGCGCTTGCAACTGCAAATGTGTCCGAATTACAGGTTAGAGTGAATGATCAAAATCAAGATCCTCCTCTGTTCACTAGTGGGGAGATTGGGAAGGACAACACAATTGCTAGGCATGGAATTCATGGACTCTACAGGCTATACAGCATCGAAGTATCAGGTCTTGTGCTAGTGGAGGGCGATAATACTTTATATCTCACACAGGCTATAGCTACCGGTCCATTTCAGGGGATCATGTATGACTACATACGTTTGGAAGGCCCCCAAGCCTCCAGCTCCATAACAGATCAATGTTAA 2049 0.4495 MTCDNSHLKEVSESDDSLHLVKKLRHVITSSAVANKTQSCKALFSSFILEVVMDNGILRVYLSKPGGVVTRIQYNGIDNLLEVLNERDNRSYWDVVWSEAGSTGTTGTFERVVGTRFTVTVETEEQVEISFTRMWDPSLKGKLSPLNIDKRYVMLRNSSGFYSYAIVEHLKEWPAFNIPQIRIVFKLRKDKYHYMAVADNRQRFMPLPDDRLPGRGDELATPEAVLLVNPVEPEFKGEVDDKYQYSSDNKDLKVHGWISTGLETAPAMGFWVIIPSNEFRSGGPVKQNLTSHVGPISLAMFLSAHYAGEDLVLKLQPNEPWKKVLGPIFVYLNTSLDDHCSLWEDAKDQMTKEVQSWPYDFPASEDYQKSNQRGSVCGTLQVRDRCLSDDYISAQGAYVGLAPPGDAGSWQRECKGYQFWTRANEEGYFSIDNIRSGDYNLYAWVPGFIGEYWNNVVLTITPGCEIYVGEIVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPNYINKLYVNHPDKFRQYGLWERYADLYPNEDLIYTVGVSDYGKDWFFAQVTRKKDDGTYQGTTWQIKFNLDNVVGSGTYNLRLALATANVSELQVRVNDQNQDPPLFTSGEIGKDNTIARHGIHGLYRLYSIEVSGLVLVEGDNTLYLTQAIATGPFQGIMYDYIRLEGPQASSSITDQC 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1351 682 Pfam Polysaccharide lyase family 4, domain III 481 669 IPR029411 -
Glsi08g1351 682 Pfam Polysaccharide lyase family 4, domain II 395 466 IPR029413 -
Glsi08g1351 682 Gene3D - 46 313 IPR014718 GO:0030246
Glsi08g1351 682 Coils Coil 585 605 - -
Glsi08g1351 682 CDD RGL4_M 372 471 IPR029413 -
Glsi08g1351 682 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 38 673 - -
Glsi08g1351 682 CDD RGL4_N 49 335 - -
Glsi08g1351 682 Gene3D - 479 670 - -
Glsi08g1351 682 FunFam Rhamnogalacturonate lyase B 369 468 - -
Glsi08g1351 682 SUPERFAMILY Galactose-binding domain-like 478 670 IPR008979 -
Glsi08g1351 682 SUPERFAMILY Starch-binding domain-like 396 463 IPR013784 GO:0030246
Glsi08g1351 682 CDD RGL4_C 483 670 - -
Glsi08g1351 682 Gene3D - 369 463 - -
Glsi08g1351 682 Pfam Rhamnogalacturonate lyase family 50 239 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1351 Glsi-ChrGlsi08 9844946 9849025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1351 50 672 Polysaccharide Lyase AT1G09890 67.093 0.0 877