Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1342 ATGAGATTCTGCAGGGGGACCTTGAGGGACCTAATTTCCAAGAGGAACCAGGAACAATCTCTTGCACCAGCTGTGCGGGTAATGAGAGCATCCTTCTATCCGTGTTTTGCACCTGATAACCAGGTTAATGACGGTGACGAACTTAGGGTTTTGGTTCTGGTACAGCTAGTGCCGGGTGGGGATTTTGGAGGGAAATTGATGGCTGCCGTGAATCCACAACCTTTGCAGGCGCGTCCGTTCAAGGAACATGTGCGAGGACCGATACCGATAGAGGACGATGACTATGAGGATGGTGGTGGGAGTGGAGTTGGTAGTGGCGATGCTATGGATGACTTGGAAGAGGCAAATGTTAATTCAGTGACTGTTGCTAACCATGGGGGAGTTATTATGACGTCCCGTACTAGTGAGCTTACTCTTTCTTTCGAGGGCGAGGTTTTCGTGTTTCCTGCTGTCACACCTGAGAAGGTGCAGGCAGTTTTGCTGCTTTTGGGAGGACGTGATGTGCCAGCAGCTGTGCCTACTGTTGAAGTACCATTTGATCAAAGTAACAAGGGGATGGGTGACACTCCAAAGCGATCAAACCTTTCAAGAAGAATAGCCTCCTTGGTTAGGTTCCGCGAAAAACGCAAGGAAAGATGTTTTGACAAGAAGATTAGGTACACTGTGCGAAAAGAGGTGGCTCAGAGGATGCATCGCAAGAATGGGCAGTTTGCATCTTTGAAAGAAAGTCCAGGTTCATCTAATTGGGATTCTGGACAGAGCTTTTGTCAAGATGGCACTCCTCACTCAGAAACTGTGCGTAGATGTCATCATTGTGGTGTCAGTGAAAATAATACTCCTGCAATGCGTCGCGGACCAGCTGGACCAAGGACTCTATGTAATGCATGTGGCCTTATGTGGGCAAATAAGGGTACACTAAGAGATCTCAGTAAGGGAGGAAGAAATATTTCTGTTGAGCAAAGCGAACTGGAGACTGCTATTGATGTCAAGCCTACTATTCTGGAAGGAGAATTGCCTGGCATCCATGATGATCAGAGAATTTCCGAAGATCCTTCTAAGGCTGTTGCTGAAGGATCTAATAATCATGTTGTCAACCATAGTGATGAGGAATTGCAGTCTGCCGAACAATTCACGAATACACTGCCATTGGGAAATGTTCATTCTTCAGCAAATGATGATGAGCAGGAACCTCTGGTTGAGCTTTCTAATCCTTCAGATACAGATATTGACATTCCTGGAAACTTCGATTAG 1251 0.4644 MRFCRGTLRDLISKRNQEQSLAPAVRVMRASFYPCFAPDNQVNDGDELRVLVLVQLVPGGDFGGKLMAAVNPQPLQARPFKEHVRGPIPIEDDDYEDGGGSGVGSGDAMDDLEEANVNSVTVANHGGVIMTSRTSELTLSFEGEVFVFPAVTPEKVQAVLLLLGGRDVPAAVPTVEVPFDQSNKGMGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESPGSSNWDSGQSFCQDGTPHSETVRRCHHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNISVEQSELETAIDVKPTILEGELPGIHDDQRISEDPSKAVAEGSNNHVVNHSDEELQSAEQFTNTLPLGNVHSSANDDEQEPLVELSNPSDTDIDIPGNFD 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1342 416 MobiDBLite consensus disorder prediction 339 358 - -
Glsi08g1342 416 SMART tify_2 130 165 IPR010399 -
Glsi08g1342 416 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 262 315 - -
Glsi08g1342 416 SMART GATA_3 263 316 IPR000679 GO:0006355|GO:0043565
Glsi08g1342 416 MobiDBLite consensus disorder prediction 369 416 - -
Glsi08g1342 416 Pfam CCT motif 198 239 IPR010402 GO:0005515
Glsi08g1342 416 ProSiteProfiles CCT domain profile. 198 240 IPR010402 GO:0005515
Glsi08g1342 416 ProSiteProfiles Tify domain profile. 130 165 IPR010399 -
Glsi08g1342 416 PANTHER GATA TRANSCRIPTION FACTOR 28 69 409 IPR045280 GO:0006355
Glsi08g1342 416 Gene3D - 261 322 IPR013088 GO:0006355|GO:0008270
Glsi08g1342 416 CDD ZnF_GATA 268 312 IPR000679 GO:0006355|GO:0043565
Glsi08g1342 416 Pfam GATA zinc finger 269 305 IPR000679 GO:0006355|GO:0043565
Glsi08g1342 416 ProSiteProfiles GATA-type zinc finger domain profile. 263 319 IPR000679 GO:0006355|GO:0043565
Glsi08g1342 416 MobiDBLite consensus disorder prediction 369 402 - -
Glsi08g1342 416 Pfam tify domain 133 164 IPR010399 -
Glsi08g1342 416 ProSitePatterns GATA-type zinc finger domain. 269 296 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1342 Glsi-ChrGlsi08 9725606 9734316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1342 82 333 Tify Gene Family AT1G51600 46.642 1.12e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi08g1342 CCT 1.7e-13 CL0281