Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1341 ATGCCTCACAGAGCGACTTACTTTTTCCCGAGGCAATTCCCGGACCGAAGGTTGGATGAATCTTCCAAACAGCTATTAGATCACGAGAAGAAGAAGATCTTCAACTCCATCAAATCAGAAACCTTTGGCGTTGAAAACGACCCCAAAAAGCCGCTATCAAGTGCTCCAACGAAGGTCGATGTCGTTTACTCGTCTAGTAACCCCTCGGCTGTATCCGACCTTTTCACGGGCGGGGACAAGCTCCGCACCCAACAGAAGCTAATTGCTGATTTCTGCGATTGGTTGATAGAGAAAAAGGGGGATAGATCGGGTCACGTGAAATCGTATTCCCACCGGGTATCATGCGAAGAAGAACGCGAGCTTCTGCTTCCTCCAGAGTCGGTGCTCGCTCCGCCCCAGCCGGAGACAGTCAAGAATACTGCTATTGACCGGAGTTTTGATCGGCAGGTATCGTTGCCAAGGTTGTCCAGTTGGAGTAGCTATGCTGGGAGCTTGTTCTCGGGGACAACGTTGGATGGCAATTTTTCTAGCGACATTAAGGAGGAAACTTCGTCGTCGGTCTTCACTACAACAAGGAGGCAAGAGGAAGATGAGGAAGAGAGTAAAGAGAGTTTGGCGCAGAAGTCCAAAGAGAGCTACTACCTGCAGCTTACGTTGGCTAAGAGGCTCACTTGTCTGACAAGTATTATTACTGAGCCCGTGCTTACGCTGGACACTAGAACCGAAACTTGGGATGCCGAATCCGTTTCTTATCGTCTATGGGTAAGTGGCTGTTTATCATACTCTGATAAGATATCGGACGGCTTTTATAACATATTGGGGATGAATCCACATTTATGGGTAATGTGCAATGAATTGGAGGAAGGTAAGCGGCTCCCACCTCTGACGGCACTTAAAGCAGTTGAACCCAGCGAAACATCTATGGAGGTGGTTCTTGTTGATAGACATGAGGACTCTCGGCTAAAACAACTTCAGGATAAAGCACAAGAATTGTATTGTGCTTCAGAGAACACCTTGGTGTTGGTGGAGAAGCTAGGAAAACTTGTTGCCATATATATGGGGGGTACCTTCCCGGTGGAGCAAGGAGATCTTCACAGGCGCTGGAAGATGGTTAGTAAGAGATTGAGGAATTTTCACAAGTGTGTTGTGCTTCCTATCGGCAGCCTATCTTCAGGACTTTGTAGGCATCGGGCAATTCTCTTCAAGAGACTGGCAGATTACATAGATTTGCCATGTCGCATTGCCCGAGGTTGCAAGTATTGTGCTGCAGACTATAGATCCTCTTGCCTTGTCAAGATTAAAGATGACAAGCAGTTCTCCAGGGAATACGTAGTTGATCTAGTTGGGGAGCCAGGAAATGTCCATGAACCAGATTCCTCAATTAATGGAGCATATGTCTCTTCAATGCCTTCCCCATTTCAAATTTCTCATTTAAAAGAATCCCAATCACCTTGTATGGACGGTGCAGCCTGTTCTGAATCTATAAATTCTAATCGCAGCTCTGTTCCTGAAAGTCATTTATATTCAGGCTGTGGACAGAATCATCAACAAGTTAATGAAACTGATTTGCTGAAAAATTCGAAGGGCTCCATTTATGCTTCAACTGGTCCAAGTTCTGAAGGAATAGAACTTCCTCTAATTCCTTTTGGCTTGAAAGGACATGCTAATGAATGTGCCGTTCTAGGTTCAGTTTTACCTTCCATCTGGGAAGATGTTTCTGAAGCTCTGCATCCACCCATTGAGGCATCATTACATGAATATCCTGGGCTTGGTGAAGATACAGTTGTAGTAAAAGAAACTTCCAACAACGAGATCATTTTATCTGGAAGTTCTGTGGTAAAAAGTACTTTAAAACAATCAATACTGACTTCCTCAAGACAGTCAGAACTGGAGAAGTTAGACAATAGACCTGAAAGCCAGGGCTATATTCCTGCTGGGAATATTCCAAGATACTTGAATCTGGAACCATCGCTTGCAATGGATTGGCTTGAGATATCATGGGATGATTTACGCATTAGAGAGCGTGTTGGTGCTGGCTCATTTGGGACAGTGCACCGAGCTGAATGGCATGGATCAGATGTTGCAGTTAAGGTTTTATCAGTTCAGGATTTCCATGACGATCAATTGAAGGAGTTTCTGAGAGAGGTTGCAATAATGAAACGTGTTCGCCATCCAAATGTGGTTCTTTTCATGGGTGCAGTGACAAAACGCCCTCATCTCTCTATAGTGACAGAATATTTGCCTAGGGGTAGTTTATACCGCCTGATACATAGGCCGGCATCTGGTGAAAATCTGGATCAAAGGAGAAAATTACGGATGGCTTTAGACGTGGCTAAAGGGGTCAATTATCTCCACTGTCTGAACCCTCCGATTTTGCACTGGGATCTCAAATCCCCTAACTTGTTAGTGGACAAAAATTGGACTGTAAAGGTGTGTGACTTTGGATTGTCGAGATTTAAGGCGAACACTTTCGAATCATCAAAATCTGTTGCTGGAACACCAGAATGGATGGCTCCTGAATTTCTTCGTGGAGAACCTTCAAATGAGAAGTCTGATGTGTACAGTTTTGGAGTCATCCTTTGGGAACTCGTGACCATGCAACAACCATGGAGCGGTCTTAGCCCAGCCCAGGTGGTTGGAGCTGTTGCTTTCCAGAATAGGAGGCTTGTTATCCCTCCAAACATCTCCCCAGTATTGGCCTCTCTCATGGAATCTTGTTGGGCTGATGACCCTAGTCAACGCCCATCTTTCTCAAACATAGTTGACTCACTAAAGAAGCTGCTGAAGTCTCCAGTGGAGGTGATAAAAAAGGATCTGTTGCAGAGAAATTCAATGGATAAGAAAGAGAAAGAATCAATGGTGCACGATATCGTGCTGCAAATTGTTCTAATCCTTGTCATGGTTTTCATGTTCTTACACATGCACGATATTCCCAAGAAACTCTTTGCCAAGTTCCGTCTCAGAAACCGACCCAATATTCAAGCCAAGCGCCACTTCGTTCAAGGCGCTCAGCTCCTGGCACGAGCTAGATCCTCCAACACTCGTTCCAGTGCGAACTCATTCGCCAAAGATGCCCTAGACGAAGCCGAGAAAGCCATTGCACTTGATCCCAAGGATGCTGCCGCTTACTTACTCAAAGCCTTGGCTCTTGATCTACAAGGCTTTAGGACTTCGGCTCTTGACTCCCTCGACATGGCTTTATCTCCCCTGGCCGTCAAATCCCTGGCCGATAGCGAGAAAGGGGACGCGCTTCTCAAGAGGGCTGAGTTGAAAATAGCGATGAATCTGCGTGGCCGGGTTGACTCGGCACTAGCCGATTTGACTGAGTCAGTACAGTTGAGTTCAAAAAACGCCAAAGCTTTTTGTTTGTTAGGGGAATGCTACGAGGCAAAGAAGATGAAAGAGGAAGCCAGAAAGGCTTACGAGGAGGCTCTCAAGGTGGAGCCCCAATTGGTTATGGCACAAGAGGCACTAAACAGATTGGATTCATAG 3492 0.4576 MPHRATYFFPRQFPDRRLDESSKQLLDHEKKKIFNSIKSETFGVENDPKKPLSSAPTKVDVVYSSSNPSAVSDLFTGGDKLRTQQKLIADFCDWLIEKKGDRSGHVKSYSHRVSCEEERELLLPPESVLAPPQPETVKNTAIDRSFDRQVSLPRLSSWSSYAGSLFSGTTLDGNFSSDIKEETSSSVFTTTRRQEEDEEESKESLAQKSKESYYLQLTLAKRLTCLTSIITEPVLTLDTRTETWDAESVSYRLWVSGCLSYSDKISDGFYNILGMNPHLWVMCNELEEGKRLPPLTALKAVEPSETSMEVVLVDRHEDSRLKQLQDKAQELYCASENTLVLVEKLGKLVAIYMGGTFPVEQGDLHRRWKMVSKRLRNFHKCVVLPIGSLSSGLCRHRAILFKRLADYIDLPCRIARGCKYCAADYRSSCLVKIKDDKQFSREYVVDLVGEPGNVHEPDSSINGAYVSSMPSPFQISHLKESQSPCMDGAACSESINSNRSSVPESHLYSGCGQNHQQVNETDLLKNSKGSIYASTGPSSEGIELPLIPFGLKGHANECAVLGSVLPSIWEDVSEALHPPIEASLHEYPGLGEDTVVVKETSNNEIILSGSSVVKSTLKQSILTSSRQSELEKLDNRPESQGYIPAGNIPRYLNLEPSLAMDWLEISWDDLRIRERVGAGSFGTVHRAEWHGSDVAVKVLSVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPASGENLDQRRKLRMALDVAKGVNYLHCLNPPILHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFESSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLSPAQVVGAVAFQNRRLVIPPNISPVLASLMESCWADDPSQRPSFSNIVDSLKKLLKSPVEVIKKDLLQRNSMDKKEKESMVHDIVLQIVLILVMVFMFLHMHDIPKKLFAKFRLRNRPNIQAKRHFVQGAQLLARARSSNTRSSANSFAKDALDEAEKAIALDPKDAAAYLLKALALDLQGFRTSALDSLDMALSPLAVKSLADSEKGDALLKRAELKIAMNLRGRVDSALADLTESVQLSSKNAKAFCLLGECYEAKKMKEEARKAYEEALKVEPQLVMAQEALNRLDS 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1341 1163 Gene3D Tetratricopeptide repeat domain 985 1162 IPR011990 GO:0005515
Glsi08g1341 1163 Gene3D Phosphorylase Kinase; domain 1 663 747 - -
Glsi08g1341 1163 CDD STKc_MAP3K-like 676 924 - -
Glsi08g1341 1163 Pfam Ethylene-responsive protein kinase Le-CTR1 246 454 - -
Glsi08g1341 1163 ProSiteProfiles Protein kinase domain profile. 670 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1341 1163 ProSitePatterns Serine/Threonine protein kinases active-site signature. 791 803 IPR008271 GO:0004672|GO:0006468
Glsi08g1341 1163 SUPERFAMILY Protein kinase-like (PK-like) 645 923 IPR011009 -
Glsi08g1341 1163 ProSiteProfiles TPR repeat profile. 1118 1151 IPR019734 GO:0005515
Glsi08g1341 1163 ProSitePatterns Protein kinases ATP-binding region signature. 676 697 IPR017441 GO:0005524
Glsi08g1341 1163 SMART tpr_5 1118 1151 IPR019734 GO:0005515
Glsi08g1341 1163 MobiDBLite consensus disorder prediction 191 205 - -
Glsi08g1341 1163 FunFam Serine/threonine-protein kinase isoform 1 660 748 - -
Glsi08g1341 1163 SUPERFAMILY TPR-like 1030 1158 IPR011990 GO:0005515
Glsi08g1341 1163 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 229 933 - -
Glsi08g1341 1163 Gene3D Transferase(Phosphotransferase) domain 1 749 936 - -
Glsi08g1341 1163 PRINTS Tyrosine kinase catalytic domain signature 895 917 IPR001245 GO:0004672|GO:0006468
Glsi08g1341 1163 PRINTS Tyrosine kinase catalytic domain signature 744 757 IPR001245 GO:0004672|GO:0006468
Glsi08g1341 1163 PRINTS Tyrosine kinase catalytic domain signature 785 803 IPR001245 GO:0004672|GO:0006468
Glsi08g1341 1163 PRINTS Tyrosine kinase catalytic domain signature 851 873 IPR001245 GO:0004672|GO:0006468
Glsi08g1341 1163 MobiDBLite consensus disorder prediction 186 205 - -
Glsi08g1341 1163 Pfam Protein tyrosine and serine/threonine kinase 671 924 IPR001245 GO:0004672|GO:0006468
Glsi08g1341 1163 FunFam Serine/threonine-protein kinase CTR1 749 934 - -
Glsi08g1341 1163 SMART serkin_6 670 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1341 Glsi-ChrGlsi08 9709162 9719543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1341 1 936 MAP Kinase Kinase Kinase AT4G24480 58.002 0.0 1087
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Glsi08g1341 PK_Tyr_Ser-Thr 1.2e-65 CL0016