Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1324 ATGCTTCCTTTTCAGAGTTTCAATGGGTATGAAAACCGGTTTGATCATTGTGGGTATTTTCAAGAGCCAAGCTCAATCAAACCGATGGAATTGGATCGTGAGAGATCGACTCTGAGCTCCGTATCAAAGTTGGGGAGGAAATACGAGGATTCATGCAAAAGTCACAGGGAAGCTGAGAGGAGACGCCGGCAGCGAATCAACGCCCACTTCTCTACTCTTCGCTCTCTCCTCCCTAACGCCGCCAAGTTAGATAAGGCCTCGTTGCTGACGGAAGTGGTCCAACACGTGAAAGAGCTGAGGAAACGGGCGGATGACGTGGCGCGTCGTCATGAAGAATACTTATCGTGCAGTGGCAGCGGCAAAGCCGGGAACAATGAGTCGTGGCCGTTCCCGGGCGAGTCAGACGATGCAATTCTGAGCTATTCCGAGGGTGCAGGGGAACCGAAGCTATTGAAAGCTACCCTGAGCTGCGAGGACCGGCCCAACCTGAACCGGGATCTAACACTGGCAATAAGGTCAGCTCGGGCCAAGGCTATTCGGGCTGAGATGATGACGGTCGGCGGCCGGACCAAGAGTATTGTTATAATGCAGTGTCCTGATGAAGGGGAAGAACAGGTTCGAGCACTGGAACAGGCTTTGAAGGCTGTGGCGGAGAATCGGGCTATGGTGGATTCTTAG 678 0.531 MLPFQSFNGYENRFDHCGYFQEPSSIKPMELDRERSTLSSVSKLGRKYEDSCKSHREAERRRRQRINAHFSTLRSLLPNAAKLDKASLLTEVVQHVKELRKRADDVARRHEEYLSCSGSGKAGNNESWPFPGESDDAILSYSEGAGEPKLLKATLSCEDRPNLNRDLTLAIRSARAKAIRAEMMTVGGRTKSIVIMQCPDEGEEQVRALEQALKAVAENRAMVDS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1324 225 PANTHER TRANSCRIPTION FACTOR BHLH30 40 221 IPR045847 GO:0003700|GO:0006355
Glsi08g1324 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 54 112 IPR036638 GO:0046983
Glsi08g1324 225 SMART finulus 56 105 IPR011598 GO:0046983
Glsi08g1324 225 Pfam Helix-loop-helix DNA-binding domain 52 99 IPR011598 GO:0046983
Glsi08g1324 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 99 IPR011598 GO:0046983
Glsi08g1324 225 Gene3D - 46 111 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1324 Glsi-ChrGlsi08 9604432 9605233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1324 28 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 36.816 3.88e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi08g1324 HLH 5.5e-14 No_clan