Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1302 ATGGGCTATCTCTCCTGCAATGCCAAGTCTGCAATAGCCACCTGCCGATGCCATCCCCAATATTGGGATCTCAAAAAGGACAACACTACCCGAAAGACAACAACTCATCACCATAGTAAGCCGCAAGAGATCAGACACTTTCAGTATTCCGACCTCGTCGCTGCCACAAATGGATTCTCCCCAGATAGATTCTTAGGCAAAGGCAGCCATGGCAGCGTCTATAAAGCTACTCTCGACGACGGCAAGCTCATCGCCGCCGTCAAAACAACCAAGTTCTCAAAGCCAAACCTCCGGAACCACGCTGCCAACTGTACCGGTTGTACTAACTGTACCAGCCCTGCAGAGAACGAGATCGAGATCCTCTCCAGAGTCCGGAGCCCTCGCCGCCTCGTCAACCTTATCGGCTTTTCTACGGACTCCAACCACAACAAATTGATTGTGGTTGAGTACATGCCCAACGGCTCGCTATACGATCTCTTGCACTCCACCTCTAGGCCGCCCGGTTGGAGCAGGCGGGTCCTGTTCGCCTTGCAGGTGGCCAAAGCCGTTCAGGCTCTGCACTCTTCCAACCCCCCGGTGATTCACCGGGACATAAAATCTTCAAATGTTTTGATCGATGAGGAGTGTAAAGGGAGGCTGGGTGATTTCGGCCTCGCTCTCAGGGGACACGTGGAAGATGTTCGTGTCAAGTGCACGCCACCGGCGGGGACTTTAGGCTACCTGGACCCCTGCTATCTTGCGCCGGGGGATCTAAGCACGAAGAGCGACGTCTTCAGCTTTGGGATATTGTTGCTGGAGATAGTCAGTGGTAGGAACGCCATCGATGTGAATTACAGCCCGCCTTCGGTGGTGGAGTGGGCCGGGCCCTTAATAAAGAATGGTGAATTTCTCGGTATCTGCGACCCTCGGATTGGGACGCCATCTGACCCGACGGTGATACAACAGCTGGCGGTATTGGCAGCAAGGTGCGTGAGGTCAAAGTCGGAGAAGCGGCCGCTGATGTCGGAGGCAGTGGAGTGCCTAAAGCAAGTGAGGAAGAGGATTGGAGCGTCGCCTATATGGAGGAGTCTGAAGCGGGGGGTGGCGCGTGTGGAGAAAGTGCAAGCGTTGAAGAGGAGTGAAGAAGTTGGGAGGGTAGTAAAAGGTGGGATCAGAAGGAACAGGAAAGTTTCGAGTGTGGGAGGTGCAGAGTATGAGAAGAGTGAAGGTGGGAATCAAGTGGTGAGGTCGAAATCGATTGGATGTGGTGATGAGATGAAAATGCAGCGGAATGCAAATGGAAGGAAGGGATTGGGGAGGCTGAACAGGTCGAGGTCTATGGGTTTTTTGCGAAGTACACGACTATTACATTTTGAAGTGGGCAAGGGTCATAACACTAATGGTCCAGTTATCTCCGAGTTGGAGGAGAAAATGCTTGAAAAACCCTTGGTTAATACTGTTGCAGCACCATGA 1452 0.5275 MGYLSCNAKSAIATCRCHPQYWDLKKDNTTRKTTTHHHSKPQEIRHFQYSDLVAATNGFSPDRFLGKGSHGSVYKATLDDGKLIAAVKTTKFSKPNLRNHAANCTGCTNCTSPAENEIEILSRVRSPRRLVNLIGFSTDSNHNKLIVVEYMPNGSLYDLLHSTSRPPGWSRRVLFALQVAKAVQALHSSNPPVIHRDIKSSNVLIDEECKGRLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPCYLAPGDLSTKSDVFSFGILLLEIVSGRNAIDVNYSPPSVVEWAGPLIKNGEFLGICDPRIGTPSDPTVIQQLAVLAARCVRSKSEKRPLMSEAVECLKQVRKRIGASPIWRSLKRGVARVEKVQALKRSEEVGRVVKGGIRRNRKVSSVGGAEYEKSEGGNQVVRSKSIGCGDEMKMQRNANGRKGLGRLNRSRSMGFLRSTRLLHFEVGKGHNTNGPVISELEEKMLEKPLVNTVAAP 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1302 483 Gene3D Phosphorylase Kinase; domain 1 21 150 - -
Glsi08g1302 483 SUPERFAMILY Protein kinase-like (PK-like) 41 345 IPR011009 -
Glsi08g1302 483 ProSiteProfiles Protein kinase domain profile. 59 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1302 483 Gene3D Transferase(Phosphotransferase) domain 1 151 353 - -
Glsi08g1302 483 ProSitePatterns Protein kinases ATP-binding region signature. 65 88 IPR017441 GO:0005524
Glsi08g1302 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Glsi08g1302 483 SMART serkin_6 59 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1302 483 Pfam Protein kinase domain 62 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1302 483 PANTHER OS01G0253100 PROTEIN 33 346 - -
Glsi08g1302 483 FunFam Serine/threonine-protein kinase-like protein 151 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1302 Glsi-ChrGlsi08 9435674 9437125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1302 24 352 Receptor kinase-like Gene Family AT3G59420 38.623 1.15e-64 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Glsi08g1302 Pkinase 2.3e-35 CL0016