Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1301 ATGGAACCCGAAGCAAAACCAGAACGTCTTCCTTTGCCACGTGGAGCACAGGTGGAGAGGGATATGGAATTTGAAGACCACCATCGGCACCAAGACCAACAAGAATCAGAGGAAGAAATGGGAATCCCGGTGCCGTCGCCGGATTACGACTCGCTCGGCAACTCAGCTAAGTCCAAAATCGGTGGTGCTGAGGGAGCTGCTTCCACCATGCCAGCTGCTAGGAAAGGTGGGTCCACCGGGACAGTCAGGTACAGAGAATGTCAAAAGAACCACGCCGTCAGCATCGGTGGCCACGCCGTTGACGGTTGCTGTGAGTTCCTGGCGGCGGGAGAGGAAGGCACGCTCGACGCTCTTAAATGCGCCGCCTGTAACTGTCACCGCAATTTTCACCGTAAGGAGATCGACGGGGAAATCTACCAGCTGCAGCCGCTGCCCCAGTCACACCACCAGTACCATCCTCAGTTTTCCCCTTACTTCCGAGGACAGCCGCCGCCGCCAGGTGGATACCTCCACCACCATTTGACGACTCCGCCGGTGGCGCAACACCGGCCCTTCGCCCTACCAACTGCGGCATCCGGAGGGGGACTAAGTAGAGAAGACGAAGATATGTCGAACCCGAGTAGCAGTGGAGGCGGTGGTGGAACGAAGAAAAGATTTAGAACTAAGTTCACGCCGGAGCAGAAGGAGAAGTTGCTGGTATTTGCTGAAAGTCTAGGGTGGAGAATCCAAAAGCACGACGAAGCTGCTGTGGAGCAATTCTGTGCGGAGACTTGTGTGAAGAGACATGTTCTCAAGGTTTGGATGCACAACAACAAGCACACACTTGGTATTGAAATTGATGGAATGGATCCTGAGCACAATTAA 864 0.5451 MEPEAKPERLPLPRGAQVERDMEFEDHHRHQDQQESEEEMGIPVPSPDYDSLGNSAKSKIGGAEGAASTMPAARKGGSTGTVRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLDALKCAACNCHRNFHRKEIDGEIYQLQPLPQSHHQYHPQFSPYFRGQPPPPGGYLHHHLTTPPVAQHRPFALPTAASGGGLSREDEDMSNPSSSGGGGGTKKRFRTKFTPEQKEKLLVFAESLGWRIQKHDEAAVEQFCAETCVKRHVLKVWMHNNKHTLGIEIDGMDPEHN 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1301 287 MobiDBLite consensus disorder prediction 1 37 - -
Glsi08g1301 287 SUPERFAMILY Homeodomain-like 206 274 IPR009057 -
Glsi08g1301 287 MobiDBLite consensus disorder prediction 1 79 - -
Glsi08g1301 287 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 59 275 - -
Glsi08g1301 287 Pfam ZF-HD protein dimerisation region 82 134 IPR006456 -
Glsi08g1301 287 MobiDBLite consensus disorder prediction 188 221 - -
Glsi08g1301 287 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 84 133 IPR006456 -
Glsi08g1301 287 FunFam Zinc-finger homeodomain protein 2 202 277 - -
Glsi08g1301 287 NCBIfam homeobox domain, ZF-HD class 216 272 IPR006455 -
Glsi08g1301 287 Gene3D - 201 276 - -
Glsi08g1301 287 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 83 134 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1301 Glsi-ChrGlsi08 9429474 9432897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1301 22 275 ZF-HD Transcription Factor Family AT4G24660 51.969 5.34e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Glsi08g1301 ZF-HD_dimer 1.9e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1015 10 6786067 6786846 Glsi08g1301 08 9429474 9432897 CCT
Glsi08g1301 08 9429474 9432897 Glsi08g1301 08 9429474 9432897 ECH