Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1290 ATGTGGTCAGCGACGAACGCGTATCAGAGGCCGACTCGACCTTACAATTCCCGGACCCAGTTGCCACAGAGTCTCGCGGTCTTGACCCGGAGTCACGTCTTCCATCCCGATTGTATCAACCTTTGGTTGGCCTCTCCCTCCACCTGCCCAGTGTGCCGGCCCAACCTCCAGCTTCCAGCACACGGGGATATTCCTTTTGTAGTCCTTCAGGTTCCAGATCCCGGTCCCTCTGATTCTGTCGAACAACAAACCAACGGAGGGACAGAAGTAGAATCTCCCAAGGTGAATTTACTGAATCAGAATCATGGTCCAACACGATCAAGGTACACGGGGTTCCTATTTTCCATATTGTTTCCGAGGTCTCACTCAACAGTACTGGTTCAACCCGGTGAGAACTTGGAGAGATTTACTCGAAGGTTGCAAGAAGAAGCAGGGAGGGAGGTACTAAAGCGTACCAAGAGCTGCGTAAGCTTTACGAGAATGAGCAGTGGGAGGTGGGGTTACAGGAGGAACTACTTGCAGTACGAGCGATTCAATGTTTCTGTTAATGAAGATAAGCTTCTACAGAACTTGGCAACCGGCTCACCGAACCACTCAAATATCGAAGAACCATCTAATGGCTCAACTTTTGCTTTAGACGAGGCCTTCGCTCTACTACTTCCTCCTATTCTCGCCTCGATTTTTCAGGGGGAGAGTCGTGGTCCTACGATTCTCAGACTAAGCAATTTCGATCGTGGCCTTAGATGGCTTGCTCTGTTTCTATTTATCTTGCCGCCGGCCACCGCACAGCTCCCAAATGTGCTGCCGCCACCGCCACCGCCACCGGATCCATTTTCAAGGCTTAGGTTCGACAGAAACATGGCCATCATCATGGTGGTCCTGGTTATTATCTTCTTCATCTTGGGCTTTCTTTCCGTCTATACTCGCCAATGCGCTGACCGACGAATGAGAGGAAGATTTGACCTCACAATCCCAGTTGGTGTGGGTGGCCGGCGATCGCGTGGTCTGGACCCGAATATCATCGACACCTTTCCCACTTTCGTGTACTCCGCCGTGAAGGGGCTTAAGATGGGTAGGAACACCCTGGAATGCGCCGTGTGCTTAAATGAGTTTCAAGACGATGAAACTCTGCGGTTGATCCCCAAATGCAGCCACGTGTTTCATCCTCATTGTATCGATATTTGGTTGGGTTCTCACTCCACCTGCCCTGTTTGCAGGGCCAACCTTATTCCAAGACCCGGGGAAACCTCCTCCATCGCCGTTCAAATCCCGAATCCATGTGTCGGATCCCAAGAACCCGATTCCCAGGAACAACATGATATAGTCGATGATAATAGGAACACAGTAGCAGCAGGACATCCAAATCGGAACCGTCCTCCCCGGTCAAGGTCAACGGGGTTTCCAATCGCCGGCTTATTACCGCGTTCTCACTCAACGGGTCACTCTTTGCCGGTCCAACCCGGCGAGAACTGGGAAAGGTTCACTCTGAGATTACCGGAGGAGGCACGAAAGCGGCTATTAAACATAACGGTGAACCGAACAAACAGTTGCGTAGAGTTTACAAGAGAGAGCAGTGAGAGGAGGGGTTACCGGACAAGAAGCGTAGGGAGCGAACTTGGAAGGAGCTATTTGCAGTACGAGCGGCTGGACAGCGAGGTCCGGGCGGAGCGCTGGGGGTTCACAATGAGGCCGCCGTTTTTGAGTAGAAATGGTTCGGCGGCGTCCAACAAGGACGATGTGGGTGAACGATCTTCTAATCCATTGTGTCCAGGGAGGAAAGATTAG 1785 0.5182 MWSATNAYQRPTRPYNSRTQLPQSLAVLTRSHVFHPDCINLWLASPSTCPVCRPNLQLPAHGDIPFVVLQVPDPGPSDSVEQQTNGGTEVESPKVNLLNQNHGPTRSRYTGFLFSILFPRSHSTVLVQPGENLERFTRRLQEEAGREVLKRTKSCVSFTRMSSGRWGYRRNYLQYERFNVSVNEDKLLQNLATGSPNHSNIEEPSNGSTFALDEAFALLLPPILASIFQGESRGPTILRLSNFDRGLRWLALFLFILPPATAQLPNVLPPPPPPPDPFSRLRFDRNMAIIMVVLVIIFFILGFLSVYTRQCADRRMRGRFDLTIPVGVGGRRSRGLDPNIIDTFPTFVYSAVKGLKMGRNTLECAVCLNEFQDDETLRLIPKCSHVFHPHCIDIWLGSHSTCPVCRANLIPRPGETSSIAVQIPNPCVGSQEPDSQEQHDIVDDNRNTVAAGHPNRNRPPRSRSTGFPIAGLLPRSHSTGHSLPVQPGENWERFTLRLPEEARKRLLNITVNRTNSCVEFTRESSERRGYRTRSVGSELGRSYLQYERLDSEVRAERWGFTMRPPFLSRNGSAASNKDDVGERSSNPLCPGRKD 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1290 594 PANTHER RING FINGER DOMAIN-CONTAINING 31 56 - -
Glsi08g1290 594 FunFam E3 ubiquitin-protein ligase ATL6 327 412 - -
Glsi08g1290 594 MobiDBLite consensus disorder prediction 568 582 - -
Glsi08g1290 594 SMART ring_2 4 52 IPR001841 -
Glsi08g1290 594 SMART ring_2 364 405 IPR001841 -
Glsi08g1290 594 SUPERFAMILY RING/U-box 360 413 - -
Glsi08g1290 594 MobiDBLite consensus disorder prediction 76 91 - -
Glsi08g1290 594 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 329 411 IPR013083 -
Glsi08g1290 594 Pfam Ring finger domain 363 406 IPR001841 -
Glsi08g1290 594 CDD RING-H2_EL5-like 363 406 - -
Glsi08g1290 594 MobiDBLite consensus disorder prediction 563 594 - -
Glsi08g1290 594 SUPERFAMILY RING/U-box 31 59 - -
Glsi08g1290 594 ProSiteProfiles Zinc finger RING-type profile. 364 406 IPR001841 -
Glsi08g1290 594 MobiDBLite consensus disorder prediction 447 467 - -
Glsi08g1290 594 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 62 IPR013083 -
Glsi08g1290 594 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1290 Glsi-ChrGlsi08 9374636 9379803 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1290 252 570 Rapid Response to Elicitors AT3G05200 41.916 5.23e-67 221