Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1289 ATGGCACTAGAGGCCGTAGTTTTCCCGCAAGATCCCTTTACTTATGGTTGCAAGGATTTATACTCCTTAGCAGGAGTAGGTGCTGCCCCTGGAGCATGTGGACTTTTCAACAATAACATAGAGCAGAGTGTGCATGCTAATTGGGATTCTTCTACCCCTTGGGCGTTCCAAAATGTGAAGGACCAATGGGATTCTAACTCTTCCCCTGAGGCCTGCACTGGAGCATTTCCTCCTCCCTCAGCCGAAGCCACACTGGCAACCACCACGGCCCGCCGTAAACGACGTCGGACCAAGAGCGCCAAGAACAAGGAGGAAATCGAGAACCAGAGGATGACTCACATTGCAGTTGAGCGCAATCGACGAAAACAGATGAATGAGTACCTGGCAGTGCTTCGATCCTTGATGCCTCCTTCTTATGTTCAAAGGGGTGACCAAGCGTCTATTATTGGAGGGGCCATTAACTTTGTGAAGGAGCTAGAGCAGCTGTTACAATGTATGGAGGGCCAAAAGAAATCAAAGCAACAAGAGCAAGGGAATGGCCTCACTAGCTCACCCTTTGCAGAGTTCTTCACGTTCCCACAGTACACGACGGATGCAAATCAGAGCAACACTGCTACCAAGGATACGATGGCACAGAAGCAGTTGGCCGTAGCAGACATAGAAGTGACCATGGTAGACAGCTATGCTAATCTCAAGATACTCTCAAAGAAACGAGCAGGCCAGCTAATGAAGATGGTTGTTGGGCTCCAAAGCCTCAGACTCACCATTCTGCACCTTAATGTTACCACTGTGCACCACATGGTCCTTTACTCCGTTAGTGTAAAGGTCGAGGAAGGGTGTCAGCTGAGCACGGTGGATGAAATCGCTGCTGCTGTGAATCAACTATTGCGCAGAATCCAAGAAGAAGCCGCTTTTAGCTGA 921 0.494 MALEAVVFPQDPFTYGCKDLYSLAGVGAAPGACGLFNNNIEQSVHANWDSSTPWAFQNVKDQWDSNSSPEACTGAFPPPSAEATLATTTARRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMEGQKKSKQQEQGNGLTSSPFAEFFTFPQYTTDANQSNTATKDTMAQKQLAVADIEVTMVDSYANLKILSKKRAGQLMKMVVGLQSLRLTILHLNVTTVHHMVLYSVSVKVEEGCQLSTVDEIAAAVNQLLRRIQEEAAFS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1289 306 SMART finulus 114 165 IPR011598 GO:0046983
Glsi08g1289 306 Pfam Helix-loop-helix DNA-binding domain 109 160 IPR011598 GO:0046983
Glsi08g1289 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 108 159 IPR011598 GO:0046983
Glsi08g1289 306 PANTHER MAX DIMERIZATION, MAD 65 303 - -
Glsi08g1289 306 Gene3D - 98 183 IPR036638 GO:0046983
Glsi08g1289 306 MobiDBLite consensus disorder prediction 67 106 - -
Glsi08g1289 306 Coils Coil 156 176 - -
Glsi08g1289 306 CDD bHLH_AtFAMA_like 111 178 - -
Glsi08g1289 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 108 178 IPR036638 GO:0046983
Glsi08g1289 306 FunFam Basic helix-loop-helix transcription factor 99 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1289 Glsi-ChrGlsi08 9364240 9365372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1289 1 276 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 51.634 3.31e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi08g1289 HLH 6.3e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1034 10 6898554 6899871 Glsi08g1289 08 9364240 9365372 CCT
Glsi08g1289 08 9364240 9365372 Glsi08g1289 08 9364240 9365372 ECH