Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1286 ATGTTTCTCAACGTCACAAGGGAAATTTACAGGAAGTTCAATTTTGATGCCCTCGACCTCAGTATGGCTGCCCGGGCTGCTGGAGGAGCATTTTGCTTCTCGCATTTTGGTGCAATGAATCTTTCATCAGAAGAGAAGAGTAAGGCATATGTTAATATAGGGCAGGCCCCCATAGGCCGATTATCTGCCAGCGATGTCGTCGAAGCCTCTGTATCAGTACTTACGGTTTGGAGAGTAGAGCTGAATGCACCAAACTTGAAGATGGGATACAGTCATCGTGATTTGGACTTTATACCAATAGCTTTGCCAAGGATACGCAGAACACTCTTTCCTGCACTAACTACTACAAACAAAACCCAAGAATGTCCTGATTATTGTGACTCGTCATGTCCTTACAACTGCTACTCCTTCCCAGACTACTACTTCCCCCCACCACCACCACCCATCTCAGATGCTGACCGCTCAAGCCCGGGTAACCTGCAGATCTCCTCCTACTTGATCATCCTTGCTTCTTTATTCACAGTCATTTTTGTTCTTGTTGGTTTCTACGTTATCAAAGCAAAGTGTTATGGCGATTGGTGTGGGCGGAGAGACAATGAATACGGTACCTCCCCATCAGACAGTTCCGACGAGGAGTTTCTTCATGAGAACCCTATCTGGTTGATCGCCACCATTGGTTTACAACAGTCAATCATAAATTCCATTACAGTTTGTAAGTATAGAAAGGGTGAGGGATTGATTGAGGGAACCGAGTGTTCAGTGTGTTTGAGTGAATTCCAGGAAGATGAAACCTTAAGACTCTTGCCAAAGTGCAACCACGCCTTTCACATCCCCTGTATTGACACTTGGTTGCGGTCTCATACCAATTGTCCTCTTTGTCGTGCTAGTATTGTCTCTAACAATGTCAGCCCTGAAGCTGCCATATCAAATTTGGCTTCAATGGAGGAAAACGCTAACAACGCGGGAAGAAATCAAGACACCCAGATGGATCGGGATGATGGTGAATTTGTCAACAACAATATGCTTGTAATAGCCAGTGGGGTCTCTGAAAACAGAGATGGAACTGGAGAAGCAGGGGAAGCCCAAGAATTGGCTGACGAATCAATTTCAAAGGAGAGTGCGAATGTGGATGGGAATCATGTGGTGCAAGTCCTAAGTGATGAAATAGAGTTACAAGAAGAAATCAGGTCTGTTTCAATGGATTTTAGATTGAATGGAAGTATATGTCCTGGTTCAGGCGTGGGAAACTCTTCTACAAGAAAGCCCGAAAGCAATCTCGTTGATCAAATACAGGATGAGACAGAACCACACGCAGTTAACCTTGTGAAGAAAGATGATGATTATTCAACCCTGCTTAAGACAGTGCGCCGTTCCTCAATCGCACAATGTCTGCACATAAGCCCCGTCTCAATGAAAAGGTCATTCTCCTGCAGTGGAAGGATTGTATCTTCCAGAGGCTACGTACAGAAGTCTAAATCCAAGTCGTCCATTTTAGGAATTTCTATCAATACAAGATGTACATATAGCGTGCCGTAA 1536 0.4447 MFLNVTREIYRKFNFDALDLSMAARAAGGAFCFSHFGAMNLSSEEKSKAYVNIGQAPIGRLSASDVVEASVSVLTVWRVELNAPNLKMGYSHRDLDFIPIALPRIRRTLFPALTTTNKTQECPDYCDSSCPYNCYSFPDYYFPPPPPPISDADRSSPGNLQISSYLIILASLFTVIFVLVGFYVIKAKCYGDWCGRRDNEYGTSPSDSSDEEFLHENPIWLIATIGLQQSIINSITVCKYRKGEGLIEGTECSVCLSEFQEDETLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRASIVSNNVSPEAAISNLASMEENANNAGRNQDTQMDRDDGEFVNNNMLVIASGVSENRDGTGEAGEAQELADESISKESANVDGNHVVQVLSDEIELQEEIRSVSMDFRLNGSICPGSGVGNSSTRKPESNLVDQIQDETEPHAVNLVKKDDDYSTLLKTVRRSSIAQCLHISPVSMKRSFSCSGRIVSSRGYVQKSKSKSSILGISINTRCTYSVP 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1286 511 PANTHER RING-H2 FINGER PROTEIN ATL16 153 401 IPR044600 GO:0016567|GO:0016740
Glsi08g1286 511 Pfam Ring finger domain 251 294 IPR001841 -
Glsi08g1286 511 CDD RING-H2_EL5-like 251 294 - -
Glsi08g1286 511 SMART ring_2 252 293 IPR001841 -
Glsi08g1286 511 ProSiteProfiles Zinc finger RING-type profile. 252 294 IPR001841 -
Glsi08g1286 511 SUPERFAMILY RING/U-box 245 299 - -
Glsi08g1286 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 303 IPR013083 -
Glsi08g1286 511 SMART FANCL_C_2 248 301 - -
Glsi08g1286 511 FunFam RING-H2 finger protein ATL54 227 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1286 Glsi-ChrGlsi08 9355564 9358298 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1286 104 298 C3H Transcription Factor Family AT1G72220 47.111 2.86e-55 189