Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1285 ATGGCGCTACTTCGTCTTCTCAGCTTTCCCTCAACGACTCACCTCTCCACGGAACACCAGCTCCACTCACTCTCATCTCTTAAGAATTCTCACCATCGATCTCACTATTCCGTCAACAATCTCTCTTTTTGTCGGCCACCCTCTTTGTTTCATTTTCTACGCCTGTCCCTTCCGCATACCCCAAACGTTCGAACCAAAGAAAGCGCTCATTTTGTACCCAAATTTGCCTCTATATCCCCAGAACAAGCGCTTGATTCTTCTCTTCCAAATGTTTCCCATGCGAGCCAGGAAACGGTGGCACAGACTGAAGAGTTTTCTCGAACCAGGTTGGTTGCTCAGAACGTACCTTGGAATAGCACTCCTGAAGACATTCGTTCTTTGTTCGAGAGGCATGGAAAAGTCCTGGACATTGAGCTTTCTATGTACAACAAGACTAGAAACAGGGGTTTGGCATTCGTTGAAATGGGTTCGGCAGAAGAGGCTCTTGCGGCTCTCAATAATCTCGAATCGTATGAATTTGAAGGTCGCGTACTAAAACTCAATTATGCTCGGCCAAAAAAGAAGAAAACTCCACCTCCCGTTCCACCAAAGCCAGTAACTTTCAATTTGTTTGTTGCAAATTTGTCATATGAAGCGAGGACTAAAGATCTCAGGGAGTTTTTTGATTCAGGAAGCGGTAGTGTTGTTTCAGCAGAGGTTATATTTCATGATAACCCTAGAAAGTCGTCTGGGTATGGATTTGTGTCCTTCAAGTCCAAGAAAGAAGCTGAGGCAGCTCTTACTGAGTTCCAAGGAAAGATTTTTATGGGAAGGCCAATCAGGGTGGCTCGTAGTAGGCAATTTGTTAAACAATCAGTAGAGAAGAGTGCAAGGTCTGAAGATACATCTTCTGAGTTGAGCGTCAGTGAGGTAGAAGCTGATAACGCTGATTGA 933 0.4469 MALLRLLSFPSTTHLSTEHQLHSLSSLKNSHHRSHYSVNNLSFCRPPSLFHFLRLSLPHTPNVRTKESAHFVPKFASISPEQALDSSLPNVSHASQETVAQTEEFSRTRLVAQNVPWNSTPEDIRSLFERHGKVLDIELSMYNKTRNRGLAFVEMGSAEEALAALNNLESYEFEGRVLKLNYARPKKKKTPPPVPPKPVTFNLFVANLSYEARTKDLREFFDSGSGSVVSAEVIFHDNPRKSSGYGFVSFKSKKEAEAALTEFQGKIFMGRPIRVARSRQFVKQSVEKSARSEDTSSELSVSEVEADNAD 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1285 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 179 IPR000504 GO:0003723
Glsi08g1285 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 274 IPR000504 GO:0003723
Glsi08g1285 310 MobiDBLite consensus disorder prediction 284 310 - -
Glsi08g1285 310 SUPERFAMILY RNA-binding domain, RBD 108 277 IPR035979 GO:0003676
Glsi08g1285 310 SMART rrm1_1 202 276 IPR000504 GO:0003723
Glsi08g1285 310 SMART rrm1_1 109 181 IPR000504 GO:0003723
Glsi08g1285 310 Gene3D - 191 299 IPR012677 -
Glsi08g1285 310 Gene3D - 74 190 IPR012677 -
Glsi08g1285 310 Coils Coil 301 310 - -
Glsi08g1285 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 280 IPR000504 GO:0003723
Glsi08g1285 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 185 IPR000504 GO:0003723
Glsi08g1285 310 PANTHER OS02G0815200 PROTEIN 35 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1285 Glsi-ChrGlsi08 9353022 9354478 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1285 108 280 Eukaryotic Initiation Factors Gene Family AT3G16380 31.522 2.03e-14 71.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1285 08 9353022 9354478 Glsi08g1285 08 9353022 9354478 ECH