LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi08g1276	ATGGATAGGAGCAAAATTCAAGAGCTTTATGATGCTTGCCGTGTTATTTTTTCTGAGGAGGGGCTACCCACTTTTCAGCAACTCCAATATCTGAAAAATCTCCTTGACAGAATTGAAGCTATAGATGTTGGAATCGATGAGTTTGGGTTGTGTGATTCTCCGATCTCAAGTCCAAAGGCTGGTAGCAGCAGGGGCTTGCTTCGTGGGCTGGCCTTATCTGAAATAACATACATTCACATCCATGAATGTGACCATTTCTCTATTGGTGTGTTCTGTCTTCCAGCAGGAAAGGTGTTTCCACTTCACGATCACCCGGGAATGACAGTGTTAAGCAAGCTCCTCTATGGCTCCGTCCACGTCAAAGCTTATGACTGGCTCAAATTGGACGGTAGTGGCTGCCAAACATGGTTTGTAAATATTGTTGTGGGTGCAGTGGGATTGGCGGGCAAGGTAATAGATGGAATATTGAAAGCACCACAGGAGCCATCCATACTATTTCCAAGAAGTGGTGGAAACATGCATTCTTTCACTGCGTTGACGCCATGTGCTATCCTAGACGTGCTGTCTCCCCCATACTCTGAAGACTTTGGAAGGCCTTCCACTTACTTCTCAGACATCCCTATTCCTTCCCTTCCCGGTTATGCCTGGCTCGAGGCAAAACCACTACCAAATGACCTAATAGTGAAAGGAGCACCATATCTTGGACCTCCAATTGTAACCGAATACGACATTTACCAATGGGGTTTTAGAAATTATAGGGATGTGATATGGATGAGTCGTGGCAGCAAGGAGGCGAATCCTACAATCCGCTGAAGAACAGGGGAGTCTGCAGAATTGGAGCGAGCGATCAAAGGAAGATTTTTTGGCTTGCGAATTAGGCAATACATGGAGCGTTACGAGATTGTCAAAGATATTGGGTTTGGGAATTTTGGGGTAGCTAAGCTGGTTAGGGATAGTTGGACTAAAGAGTACTTTGCTGTCAAGTTTATTGAGAGAGGCCAGAAGATTGATGAGCTTGTGCAAAGGGAAATCATGAACCATAGATCATTGAAGCATCCCAATATTGTTAGATTCAAAGAGGTCCTGCTAACGCCAACTCATCTTGCGATAGTCATGGAGTATGCGGATGGCGGAGAACTCTTTGAGAGGATATGCAATGCTGGTAGATTCATTGAGGATGAGGCAAGATTTTTCTTTCAGCAATTGATTTCAGGAGTCAGTTACTGCCACTCAATGCAAATCTGTCATAGAGATCTTAAACTTGAAAACACACTTTTAGACGGCAGCGCTGCACCGCGTGTCAAAATTTGTGACTTTGGATACTCAAAGTCATCTGTATTGCATTCACAACCAAAGTCTACCGTAGGAACTCCGGCTTACATTGCACCTGAGGTCCTATCAAGGAAAGAATATGATGGAAAGATTGCAGATGTTTGGTCTTGTGGAGTCACCTTATATGTGATGCTAGTTGGGGCTTATCCCTTTGAAGACCCAGAGGATCCAAGAAACTTTAGAAAAACCATAGGGAGGATACTTAGCGTCCAGTACTCAATCCCAGATTATGTACGAGTTTCCATGGAATGCAAACAACTTCTATCACAGATATTTGTGGCGAATCCTGAAAAGAGAGTAAGTATAACAGAAATCAAACGCCATCCATGGTTTTTGAGGAACTTGCCCATCGAACTAATGGAAGGTGGAAGCTGGGAGAGCAATGATGTAAATAATCCATCACAAAGTGTTGAGGAAGTGCTGTCCATAATACAAGAGGCAAGAAAACCTCTTAGCGTCCACATGGTTGGTGGCCTTGTTACTGGAGGCAGCATGGACCTTGATGACTTGGATGCTGATGCAGATGTTGAAGATATAGAAACAAGTGGTGATTTTGTGTGCCCTCTGTAA	1902	0.4401	MDRSKIQELYDACRVIFSEEGLPTFQQLQYLKNLLDRIEAIDVGIDEFGLCDSPISSPKAGSSRGLLRGLALSEITYIHIHECDHFSIGVFCLPAGKVFPLHDHPGMTVLSKLLYGSVHVKAYDWLKLDGSGCQTWFVNIVVGAVGLAGKVIDGILKAPQEPSILFPRSGGNMHSFTALTPCAILDVLSPPYSEDFGRPSTYFSDIPIPSLPGYAWLEAKPLPNDLIVKGAPYLGPPIVTEYDIYQWGFRNYRDVIWMSRGSKEANPTIRXRTGESAELERAIKGRFFGLRIRQYMERYEIVKDIGFGNFGVAKLVRDSWTKEYFAVKFIERGQKIDELVQREIMNHRSLKHPNIVRFKEVLLTPTHLAIVMEYADGGELFERICNAGRFIEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSAAPRVKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIGRILSVQYSIPDYVRVSMECKQLLSQIFVANPEKRVSITEIKRHPWFLRNLPIELMEGGSWESNDVNNPSQSVEEVLSIIQEARKPLSVHMVGGLVTGGSMDLDDLDADADVEDIETSGDFVCPL	633

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi08g1276	633	SUPERFAMILY	Protein kinase-like (PK-like)	286	564	IPR011009	-
	Glsi08g1276	633	Pfam	Protein kinase domain	299	555	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi08g1276	633	Gene3D	Phosphorylase Kinase; domain 1	284	374	-	-
	Glsi08g1276	633	Gene3D	Transferase(Phosphotransferase) domain 1	375	562	-	-
	Glsi08g1276	633	Gene3D	Jelly Rolls	70	204	IPR014710	-
	Glsi08g1276	633	SUPERFAMILY	RmlC-like cupins	3	203	IPR011051	-
	Glsi08g1276	633	CDD	STKc_SnRK2	298	554	-	-
	Glsi08g1276	633	SMART	serkin_6	299	555	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi08g1276	633	FunFam	Serine/threonine-protein kinase SRK2E	375	563	-	-
	Glsi08g1276	633	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	414	426	IPR008271	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi08g1276	Glsi-ChrGlsi08	9293313	9298350	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi08g1276	298	574	CBL-interacting serine-threonine protein kinases	AT4G24400	41.259	1.23e-63	214

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_OST1L	Glsi08g1276		Pkinase	1.4e-70	CL0016

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