Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1276 ATGGATAGGAGCAAAATTCAAGAGCTTTATGATGCTTGCCGTGTTATTTTTTCTGAGGAGGGGCTACCCACTTTTCAGCAACTCCAATATCTGAAAAATCTCCTTGACAGAATTGAAGCTATAGATGTTGGAATCGATGAGTTTGGGTTGTGTGATTCTCCGATCTCAAGTCCAAAGGCTGGTAGCAGCAGGGGCTTGCTTCGTGGGCTGGCCTTATCTGAAATAACATACATTCACATCCATGAATGTGACCATTTCTCTATTGGTGTGTTCTGTCTTCCAGCAGGAAAGGTGTTTCCACTTCACGATCACCCGGGAATGACAGTGTTAAGCAAGCTCCTCTATGGCTCCGTCCACGTCAAAGCTTATGACTGGCTCAAATTGGACGGTAGTGGCTGCCAAACATGGTTTGTAAATATTGTTGTGGGTGCAGTGGGATTGGCGGGCAAGGTAATAGATGGAATATTGAAAGCACCACAGGAGCCATCCATACTATTTCCAAGAAGTGGTGGAAACATGCATTCTTTCACTGCGTTGACGCCATGTGCTATCCTAGACGTGCTGTCTCCCCCATACTCTGAAGACTTTGGAAGGCCTTCCACTTACTTCTCAGACATCCCTATTCCTTCCCTTCCCGGTTATGCCTGGCTCGAGGCAAAACCACTACCAAATGACCTAATAGTGAAAGGAGCACCATATCTTGGACCTCCAATTGTAACCGAATACGACATTTACCAATGGGGTTTTAGAAATTATAGGGATGTGATATGGATGAGTCGTGGCAGCAAGGAGGCGAATCCTACAATCCGCTGAAGAACAGGGGAGTCTGCAGAATTGGAGCGAGCGATCAAAGGAAGATTTTTTGGCTTGCGAATTAGGCAATACATGGAGCGTTACGAGATTGTCAAAGATATTGGGTTTGGGAATTTTGGGGTAGCTAAGCTGGTTAGGGATAGTTGGACTAAAGAGTACTTTGCTGTCAAGTTTATTGAGAGAGGCCAGAAGATTGATGAGCTTGTGCAAAGGGAAATCATGAACCATAGATCATTGAAGCATCCCAATATTGTTAGATTCAAAGAGGTCCTGCTAACGCCAACTCATCTTGCGATAGTCATGGAGTATGCGGATGGCGGAGAACTCTTTGAGAGGATATGCAATGCTGGTAGATTCATTGAGGATGAGGCAAGATTTTTCTTTCAGCAATTGATTTCAGGAGTCAGTTACTGCCACTCAATGCAAATCTGTCATAGAGATCTTAAACTTGAAAACACACTTTTAGACGGCAGCGCTGCACCGCGTGTCAAAATTTGTGACTTTGGATACTCAAAGTCATCTGTATTGCATTCACAACCAAAGTCTACCGTAGGAACTCCGGCTTACATTGCACCTGAGGTCCTATCAAGGAAAGAATATGATGGAAAGATTGCAGATGTTTGGTCTTGTGGAGTCACCTTATATGTGATGCTAGTTGGGGCTTATCCCTTTGAAGACCCAGAGGATCCAAGAAACTTTAGAAAAACCATAGGGAGGATACTTAGCGTCCAGTACTCAATCCCAGATTATGTACGAGTTTCCATGGAATGCAAACAACTTCTATCACAGATATTTGTGGCGAATCCTGAAAAGAGAGTAAGTATAACAGAAATCAAACGCCATCCATGGTTTTTGAGGAACTTGCCCATCGAACTAATGGAAGGTGGAAGCTGGGAGAGCAATGATGTAAATAATCCATCACAAAGTGTTGAGGAAGTGCTGTCCATAATACAAGAGGCAAGAAAACCTCTTAGCGTCCACATGGTTGGTGGCCTTGTTACTGGAGGCAGCATGGACCTTGATGACTTGGATGCTGATGCAGATGTTGAAGATATAGAAACAAGTGGTGATTTTGTGTGCCCTCTGTAA 1902 0.4401 MDRSKIQELYDACRVIFSEEGLPTFQQLQYLKNLLDRIEAIDVGIDEFGLCDSPISSPKAGSSRGLLRGLALSEITYIHIHECDHFSIGVFCLPAGKVFPLHDHPGMTVLSKLLYGSVHVKAYDWLKLDGSGCQTWFVNIVVGAVGLAGKVIDGILKAPQEPSILFPRSGGNMHSFTALTPCAILDVLSPPYSEDFGRPSTYFSDIPIPSLPGYAWLEAKPLPNDLIVKGAPYLGPPIVTEYDIYQWGFRNYRDVIWMSRGSKEANPTIRXRTGESAELERAIKGRFFGLRIRQYMERYEIVKDIGFGNFGVAKLVRDSWTKEYFAVKFIERGQKIDELVQREIMNHRSLKHPNIVRFKEVLLTPTHLAIVMEYADGGELFERICNAGRFIEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSAAPRVKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIGRILSVQYSIPDYVRVSMECKQLLSQIFVANPEKRVSITEIKRHPWFLRNLPIELMEGGSWESNDVNNPSQSVEEVLSIIQEARKPLSVHMVGGLVTGGSMDLDDLDADADVEDIETSGDFVCPL 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1276 633 SUPERFAMILY Protein kinase-like (PK-like) 286 564 IPR011009 -
Glsi08g1276 633 Pfam Protein kinase domain 299 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1276 633 Gene3D Phosphorylase Kinase; domain 1 284 374 - -
Glsi08g1276 633 Gene3D Transferase(Phosphotransferase) domain 1 375 562 - -
Glsi08g1276 633 Gene3D Jelly Rolls 70 204 IPR014710 -
Glsi08g1276 633 SUPERFAMILY RmlC-like cupins 3 203 IPR011051 -
Glsi08g1276 633 CDD STKc_SnRK2 298 554 - -
Glsi08g1276 633 SMART serkin_6 299 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1276 633 FunFam Serine/threonine-protein kinase SRK2E 375 563 - -
Glsi08g1276 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Glsi08g1276 633 PANTHER SERINE/THREONINE KINASE 297 572 - -
Glsi08g1276 633 Pfam PCO_ADO 35 238 IPR012864 GO:0016702
Glsi08g1276 633 CDD cupin_ADO 84 193 - -
Glsi08g1276 633 ProSitePatterns Protein kinases ATP-binding region signature. 305 328 IPR017441 GO:0005524
Glsi08g1276 633 ProSiteProfiles Protein kinase domain profile. 299 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1276 Glsi-ChrGlsi08 9293313 9298350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1276 298 574 CBL-interacting serine-threonine protein kinases AT4G24400 41.259 1.23e-63 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Glsi08g1276 Pkinase 1.4e-70 CL0016