Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1275 ATGGAAAATTCTCCGGCGCAGACGGCGGGTGGACCCCGAGATCGCAGAGCAGATGCACTTGGAGATCTTCGAATTCTTCCCGATGAAATCCTCTGCGCAATTTTGGAGCGACTCATTCCTCGAGACGTTGCTCGTGTTGCTTGCGTTAGCAGCGTGATGTACATATTATGCAATGAAGAACCACTGTGGATGAGTTTATGCCTTAAACGAGTGTCTGATTTACTTCAGTACAAAGGCTCTTGGAAGAAAACTGCCCTGCATCTTGAGAATTTTCCAGACAAATACAAGGAGGGCAACAGAGGACCTCTGCATTTTGATGGATTCAGCTCGTTATTTTTGTATAGAAGATTATATAGGTGTCATACCACGTTGGATGCATTTTATGCAGATAATGGAAACGTGGAAAGAAGAAAAGACGTCTCTCTAAAAGAATTTCGTGATGTTTATGATGGGAAGAAACCGGTCATGCTGACTGGTTTGGCTGATACATGGCCTGCGAGGCATAAATGGACAACTGATCAGCTTTTGCTAAACTATGGAGACGTAGCATTTAAGATTTCTCAAAGGATTTCGCGGAAGATCTCAATGAAGTTTAAGGATTATGTCTCTTACATGAAACTTCAACATGATGAAGATCCGTTATACATTTTTGATGAAAAGTTTGGTGAAGTGGCACCGAGCATGCTGAAGGATTACTGTGTGCCCCATCTGTTTCAAGAAGACTTCTTTGATATCTTAGATGCTGATAAACGACCGTCCTATAGGTGGCTCATAATTGGGCCTGAGAGATCTGGTGCCTCTTGGCATGTTGATCCTGCTCTTACCAGTGCCTGGAATACGCTTCTTTCTGGTCGTAAAAGGTGGGCATTATATCCTCCAGGAAAGGTGCCTTTGGGAGTGACAGTGCATGTTAATGAAGAAGATGGTGATGTTAACATTGAGACTCCATCATCACTGCAGTGGTGGCTAGACTTTTATCCACTTCTTGCTGATGAAGACAAGCCAATCGAGTGCACCCAATTACCTGGAGAGACAATTTATGTTCCAAGTGGATGGTGGCACTGTGTTCTGAATTTGGAAACAACTATTGCTGTTACACAAAATTATGCAAATTCCAATAACTTTGAATTTGTTTGTTTGGATATGGCACCTGGTTATCGTCATAAAGGAATTTGCCGTGCTGGATTGCTTGCTTTTGATGCAGATAGTTATGACGATGTCAGACAGAATATGTTCTGTGATAAAGACTTAACTCATTCTGATTTGGCAAGGAGAGAGAAGAGAGCCCGAACTCAAAAAGACGGAGATGATTTAAATCGTGATAGAGCCATAAATAATGCATCTAGAAACTATAATTTATGGAAAGATGGATTTTCTTATGATATAAATTTCTTATCCATGTTTTTGAATAAAGATAGAGACCACTACACTTCCCCTTGGAGCTCAGGAAACAGCATTGGCCAAAGAGAACTAAGAGAATGGTTATGTAAACTTTGGATTGGAAAACCAGGAATGAGAGAGCTAATCTGGAAGGGGGCATGTATTGCGCTAAATGCTGGCAAGTGGTTAGAATGCCTATCAGAAATTTGTTCCTTCCACAATATGCCCTCTCCCACAGATGATGAAAACCTTCCTGTTGGTACCGGTAGCAATCCTGTTTATCTTGTTGGAAACTCTGTTGTCAAAATTTTTGTTGAAGGAGGGCTGGAAGCTGCACTTTATGGTTTAGGCACAGAGCTAGAATTTTACAGTCTTTTGCATGAAGTCAACTCCCCTCTCAAGAATCATATTCCGAATGTTTTGGCCAGTGGGATTCTTTATGTTGAAGATGGAACTTACACCATTCTGCCATGGGATGGAAAGGGACTTCCTGATATCATTGCCAAGAGCAATCTAATCAGGCAGAAATGCGGAGTTGATGGTTTCTCATTTGGTGTATGGGGCAAGAAACAGTTTGAATATAGGAATTGTGGGAAGCTGATAGATGGATCAGTTAGTTCAGCTGGTCACTCAAACATATGGCCATATGTTATAACAAAACGTTGTGAGGGAAAAATTTATGCAGAGTTAAGAGAAAGACTATCACAGGAAGATATAATGAACTTAGCTTCCTTCTTGGGGGAGCAACTGCGCCACATTCATCTCTTAAAACATCCACCTTTGAGTATTTCGGCTTTCTCTGATATTGAACAGGAATCAGGCTTGCCTGAGAATAGGGGTTGTGTTGCAGCTATTACTAATAAATCAAACATTCTAGCAGAGTGGGAAATCTTCACCAGAACCTTAACAAGGAAGAGGAAGGATGTCTCAACCCGTTTGACTAATTGGGGAGACCCAATCCCTAGCAAACTGATAGAGAAAGTTGATGAATATATCCCACCTGAATTTGCAAATCTGTTAAACATAACCGAGGATTCCCCAAGCAGTGCTTGTAAAGTGTGCTCCTGGATACACTCTGACATTATGGATGATAACATTTACATGGAACCATCATGGGATTCTACCCCAGGTGGAAATGCTGAAAATGCTGGCCTCGTGAACAATGGTTTTTTGAATGTTTATGGTGTAGGTAGAGATATGGAGTCATGGCATCCTAGCTACATCCTTGATTTCAGTGATCTTTCAATAGGTGATCCTATTTTTGACTTGATACCAATCTATTTAGATGTATTTAGAGGTGATTCTTTTCTCCTTAAGCGATTTTTAGAAAGCTACAAACTTCCTTTTGCAATTAACATATCAAAGTATGAGTCAACAGAGAGTGGTGATAAGTTTGGCCGACTTTCATATCTTGCCATGTGCTACAGTATTTTGCATGACGACAATGTCTTGGGGGCTATTTTTAGTATATGGGATGAACTTAGAGCAGCAGATTCATGGGAAGAAGTTGAGCTGACAGTGTGGGGGGACTTAAACAATTACAAAGGCTTTCCTTGA 2937 0.4096 MENSPAQTAGGPRDRRADALGDLRILPDEILCAILERLIPRDVARVACVSSVMYILCNEEPLWMSLCLKRVSDLLQYKGSWKKTALHLENFPDKYKEGNRGPLHFDGFSSLFLYRRLYRCHTTLDAFYADNGNVERRKDVSLKEFRDVYDGKKPVMLTGLADTWPARHKWTTDQLLLNYGDVAFKISQRISRKISMKFKDYVSYMKLQHDEDPLYIFDEKFGEVAPSMLKDYCVPHLFQEDFFDILDADKRPSYRWLIIGPERSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEEDGDVNIETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNYANSNNFEFVCLDMAPGYRHKGICRAGLLAFDADSYDDVRQNMFCDKDLTHSDLARREKRARTQKDGDDLNRDRAINNASRNYNLWKDGFSYDINFLSMFLNKDRDHYTSPWSSGNSIGQRELREWLCKLWIGKPGMRELIWKGACIALNAGKWLECLSEICSFHNMPSPTDDENLPVGTGSNPVYLVGNSVVKIFVEGGLEAALYGLGTELEFYSLLHEVNSPLKNHIPNVLASGILYVEDGTYTILPWDGKGLPDIIAKSNLIRQKCGVDGFSFGVWGKKQFEYRNCGKLIDGSVSSAGHSNIWPYVITKRCEGKIYAELRERLSQEDIMNLASFLGEQLRHIHLLKHPPLSISAFSDIEQESGLPENRGCVAAITNKSNILAEWEIFTRTLTRKRKDVSTRLTNWGDPIPSKLIEKVDEYIPPEFANLLNITEDSPSSACKVCSWIHSDIMDDNIYMEPSWDSTPGGNAENAGLVNNGFLNVYGVGRDMESWHPSYILDFSDLSIGDPIFDLIPIYLDVFRGDSFLLKRFLESYKLPFAINISKYESTESGDKFGRLSYLAMCYSILHDDNVLGAIFSIWDELRAADSWEEVELTVWGDLNNYKGFP 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1275 978 Gene3D Cupin 118 370 - -
Glsi08g1275 978 ProSiteProfiles F-box domain profile. 20 66 IPR001810 GO:0005515
Glsi08g1275 978 Gene3D - 17 96 - -
Glsi08g1275 978 Pfam F-box-like 25 69 IPR001810 GO:0005515
Glsi08g1275 978 Coils Coil 978 978 - -
Glsi08g1275 978 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 20 591 - -
Glsi08g1275 978 FunFam F-box protein At1g78280 114 371 - -
Glsi08g1275 978 Pfam Cupin-like domain 143 373 IPR041667 -
Glsi08g1275 978 SUPERFAMILY F-box domain 16 83 IPR036047 GO:0005515
Glsi08g1275 978 SUPERFAMILY Clavaminate synthase-like 130 378 - -
Glsi08g1275 978 ProSiteProfiles JmjC domain profile. 223 386 IPR003347 -
Glsi08g1275 978 SUPERFAMILY Protein kinase-like (PK-like) 674 908 IPR011009 -
Glsi08g1275 978 SMART cupin_9 218 381 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1275 Glsi-ChrGlsi08 9281914 9290974 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1275 8 974 Glycosyltransferase AT1G78280 60.901 0.0 1214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Glsi08g1275 Cupin_8 9.5e-23 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1275 08 9281914 9290974 Glsi08g1275 08 9281914 9290974 ECH