Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1268 ATGAAGAACGGCAGGCTGAGTCCTGAACAAGAAGCTTTGTTAAAGCATACATTTCAGGCTTCATGTTTATTGATGATCAGCCGATTAGCTGATTACCATAGTTTTATGAACCCCACGCCAGCTAGTCAGCTACGTACTTATTCTTCATATTATCTTTCTAAAGTGAAGCAGAGGAGACCCAATAAATACCCTTACCTAGAGAATTATAGGATGGAGCCCTCGGATATAGCATGTAGCTCTTATTACCTGCCTTCTTCACATGCCCATGACACTAATTCCAATATTTTCCCAGATATGAATCGGAATCAGCTTCAGGCTCTACCTCTTCTAAGCAGCTTCCTTGGTTCAGCTCCACTTACCACAAAACCTAATGCATGTTACAGTCATGAGGAGGAGGATGTCACAGTAGCCTTGCACATAGGCCTCCCTGATAATTCCAGCAATCCAAATGGAATTTTGAATGCAGCCCAGGTTCCCAACAATTACTGGATACCAACTCAAGAGCAGATCCTTATTGGATTCAGTCATTTCTCTTGTCCTGTCTGCCTTAAAACCTTCAACCGCTACAACAATCTTCAGATGCATATGTGGGGACATGGATCACAGTATCGAAGAGGGCCAGAGTCGCTGAAACGAACTCATCCACGACCCTTGTTAGACATTCCATGCTATTGTTGCTCTAGAGGATGCAAGAACAACATAGAGCACCCGAGAGCTAAGCCTCTCAAGGATTTTCGAACGCTGCAGACACACTACAAGAGGAAGCACGGGACGAAGCCCTTTATGTGCCGCAAGTGCGGGAAGCCTTTGGCAGTAAAGGGTGATTGGCGAACTCATGAGAAAAATTGCGGCAAGCGTTGGCTTTGCGTTTGTGGTTCAGACTTCAAACACAAGAGATCGCTTAAAGACCATATTAAAGCTTTTGGCTCTGGTCATACCCCTTTTTCTCCTTCATCAGAGGGCATGTAA 969 0.4469 MKNGRLSPEQEALLKHTFQASCLLMISRLADYHSFMNPTPASQLRTYSSYYLSKVKQRRPNKYPYLENYRMEPSDIACSSYYLPSSHAHDTNSNIFPDMNRNQLQALPLLSSFLGSAPLTTKPNACYSHEEEDVTVALHIGLPDNSSNPNGILNAAQVPNNYWIPTQEQILIGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPESLKRTHPRPLLDIPCYCCSRGCKNNIEHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKPLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGHTPFSPSSEGM 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1268 322 Gene3D Classic Zinc Finger 176 199 - -
Glsi08g1268 322 SUPERFAMILY beta-beta-alpha zinc fingers 172 199 IPR036236 -
Glsi08g1268 322 PANTHER ZINC FINGER PROTEIN WIP2 80 315 IPR043584 GO:0003700|GO:0010468
Glsi08g1268 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 177 204 IPR013087 -
Glsi08g1268 322 ProSitePatterns Zinc finger C2H2 type domain signature. 179 199 IPR013087 -
Glsi08g1268 322 FunFam Zinc finger protein WIP2 230 312 - -
Glsi08g1268 322 Gene3D Classic Zinc Finger 239 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1268 Glsi-ChrGlsi08 9221809 9224325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1268 89 315 C2H2 Transcription Factor Family AT1G34790 58.555 6.52e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi08g1268 None None None