Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1267 ATGGCTGTGTTCCAGAAGGGGAAACGGAAATCTATTGGAGAGGAAGAGGAGGAGGACAAGCAAATAAGACTAGTTAATAGTCAAGAGGTGGAGGAAAATGGAAAATTGATTGGAGGGTGGGAGAGTATATTAATGCAGAGACAGAGAGGACACACTTCAAGTGAGATAGTTACGAAGCTGTCACTCCCTGCTACAAAGCCCACTATCTCTTCCTTCCCTCTTGGCCAGCAAATTAGCTTCGGCGACACAACATTCACCAAAGTGTTTGTTGGAGGACTAGCTTGGGAGACTCCCACTGAAGAAATGCGTAAATATTTCGAGCAGTTCGGAGACATTCTTGAGGCCGTTATAATAACTGATAAGAATACAGGGAAATCTAAAGGCTATGGATTCGTAACATTTCGTGACCCAGAATCGGCCAGAAGGGCGTGTGCTGATCCGAACCCTGTAATAGATGGAAGAAGAGCAAATTGTAATATTGCTTCTCTGGGACGACCAAGACCTTCACCACCCCGAGGAAGAAATATATTTCAAGGTGGAGGATCGGCACAGAGGGCAGCAGTGCCCCCGCCACCGCCGCCGCCACCGCCTCCTCTTGTGTACTCGCCATACGGTTACCCTACCTACAGTACTCCTGATTATGGGTACCCCCAAGCGGGATTGTACAACTCACAGATTCAGCAGCCACAATACTATCAACAATTCTATGGACCATCATCTTCGGGCATGGGTTCCCCATATTACTATGGGTATTCTGTGCAAAGAGGCACATATTCTACACCCCATGCACATCATAGCCTACCAGCTGGACCATCCTATCTATACTACCCTACGCCAATTGAAGCTTCCCTCTCCGCTTACCATCCACCCCAACAACCAACACTGAGGCAACCCATCCCTTCCCCTACTGGGAAACCCCAACCCCATGTGAATGAGCTGTCAGGGTTGTGGCATGAAACTTATAATGTAAAATTCAGAGAGTCAGCAGCAGCGTACCTCCTCCCAGCAGCAGCCGGAGTAGCTATAGCTTCAGAAAGTCCAAATACCTAA 1050 0.4819 MAVFQKGKRKSIGEEEEEDKQIRLVNSQEVEENGKLIGGWESILMQRQRGHTSSEIVTKLSLPATKPTISSFPLGQQISFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRNIFQGGGSAQRAAVPPPPPPPPPPLVYSPYGYPTYSTPDYGYPQAGLYNSQIQQPQYYQQFYGPSSSGMGSPYYYGYSVQRGTYSTPHAHHSLPAGPSYLYYPTPIEASLSAYHPPQQPTLRQPIPSPTGKPQPHVNELSGLWHETYNVKFRESAAAYLLPAAAGVAIASESPNT 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1267 349 CDD RRM_RBM24_RBM38_like 86 161 - -
Glsi08g1267 349 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 163 IPR000504 GO:0003723
Glsi08g1267 349 SMART rrm1_1 87 159 IPR000504 GO:0003723
Glsi08g1267 349 FunFam RNA-binding protein 24-B isoform X1 75 182 - -
Glsi08g1267 349 MobiDBLite consensus disorder prediction 161 197 - -
Glsi08g1267 349 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 145 IPR000504 GO:0003723
Glsi08g1267 349 SUPERFAMILY RNA-binding domain, RBD 85 182 IPR035979 GO:0003676
Glsi08g1267 349 Gene3D - 18 182 IPR012677 -
Glsi08g1267 349 PANTHER BOULE-RELATED 62 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1267 Glsi-ChrGlsi08 9218061 9221437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1267 82 162 C2H2 Transcription Factor Family AT2G19380 39.506 1.28e-14 73.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1267 08 9218061 9221437 Glsi08g1267 08 9218061 9221437 ECH