Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1257 ATGGGAAGGTCCCCATGCTGCGATGAAAATGGCATCAAGAAAGGACCCTGGACGCCCGAAGAAGATCAAAAGCTCGTCCAATACATTCAAAAGCATGGCCATGGAAGTTGGAGAGCTCTCCCCAAGCTAGCTGGTCTTAATAGATGTGGAAAAAGCTGCAGGCTAAGGTGGACCAACTACTTAAGGCCTGATATCAAGAGGGGGAAATTTTCTCAAGAAGAGGAGCAAACAATTCTGCACCTCCATTCCATCCTTGGCAATAAATGGTCAGCAATTGCGTCCCATCTTCCTGGGAGGACGGATAATGAGATCAAGAATTTCTGGAATACTCATTTAAAGAAGAAGCTGATTCAGATGGGTTTCGATCCAATGACACACCAGCCAAGAACTGACCTTGTTTCAAGCTTGCCATATCTGCTAGCTTTGGCCAACATGACAGACCTAATGGATCATCAATCATTGGATGAACAAGCCATGAGGTTACAAGCTGAGGCACTTCAGTTGGCAAAGCTTCATTATTTACTCCAATCCACAACTTGCTTAAGTACCAACTCCTATGACCAAAGTGCCGTCACAAACACGGAAGCTCCCAATTTGCTAACTTCAGTCTCTACTGTCAATGAGAATAAACCAGTTATAAACTGCCCACAACTGGATAATAATGCATCCTTATTTTCTCATGGGATTGCTATCTCCCATCACCCCCCAAACATGTCATCTCACTTTTCAGACCCACAAGTCTCTTCCAGTTCTCAATCATGTTTGAATCAAGATACCAACTTTACAATGATTAGTCAAGGGGATCACATTGCTAATGAGTCTTCCTGGATTGTCCCATCTCCTGCTCCTTCTATTCCTCCAACTGTGACAGGAGATGCCAGTGCCAGCAGTTGCACTTCTAGCTATGGAGGAGGAACCTCATCTTTTTGGCCTGAACTATTTTTTGAGGACCCAATTATGCATGAATTATCTTAA 975 0.4379 MGRSPCCDENGIKKGPWTPEEDQKLVQYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSSLPYLLALANMTDLMDHQSLDEQAMRLQAEALQLAKLHYLLQSTTCLSTNSYDQSAVTNTEAPNLLTSVSTVNENKPVINCPQLDNNASLFSHGIAISHHPPNMSSHFSDPQVSSSSQSCLNQDTNFTMISQGDHIANESSWIVPSPAPSIPPTVTGDASASSCTSSYGGGTSSFWPELFFEDPIMHELS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1257 324 CDD SANT 69 112 IPR001005 -
Glsi08g1257 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 246 - -
Glsi08g1257 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi08g1257 324 CDD SANT 16 61 IPR001005 -
Glsi08g1257 324 FunFam Transcription factor MYB39 69 130 - -
Glsi08g1257 324 FunFam MYB-related transcription factor 13 66 - -
Glsi08g1257 324 Gene3D - 13 66 - -
Glsi08g1257 324 SMART sant 66 114 IPR001005 -
Glsi08g1257 324 SMART sant 13 63 IPR001005 -
Glsi08g1257 324 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Glsi08g1257 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi08g1257 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi08g1257 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi08g1257 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi08g1257 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi08g1257 324 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1257 Glsi-ChrGlsi08 9162413 9163689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1257 1 324 MYB Transcription Factor Family AT1G34670 52.989 1.86e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi08g1257 Myb_DNA-binding 1.3e-17 CL0123