Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1248 ATGTCTCACTTCGGAAGATCTGGCCCTCCGGACATCAGAGACACCTACTCCCTTCTCGTCCTCAATATCACTTTCCGAACAACCGCTGACGATCTTTACCCGCTTTTCGATAAGTACGGCAAGGTCGTCGATGTCTTCATACCAAGAGACCGAAGGACTGGCGAATCGCGAGGTTTCGCGTTTGTTCGTTATAAGTATGCAGACGAGGCACAAAAGGCTGTGGAGAAGCTCGATGGAAGAATTGTCGACGGCAGAGAAATAATGGTTCAATTTGCAAAATACGGTCCTAATGCTGAGAAAATACAAAAGGGCAGGATAGTGGAATCATCTTCAAAGCCGAAAGGGAGATCAAGAAGCCGTAGCCCTCGTCCAAGGTCTAGGGATGAATATAAAGACAGAGATTACAGGAGAAGAAGTCGCAGTAGAAGTAGGGAAAGATATGATCGTGACAAGTACCGTGAAAGGGAGAGGGATCATCGTCGTCGTCAAAGCAGGAGCCTCAGTGCTAGTCCTGATTATCACAAAGACCACAAGAGAGGAAGATATGATGAGGAGCGACGTGCACGAAGCAGATCTTATGATAGTGAGTCTCCGGCTCGGCATGGTGCCAGTCCCAGTCCTCATAGGAGTCCATCTCAACACAAGAAGTCTTCTCAGGATGGACAGCATGATGAAAGAAATAATAATGACCAATCACCTGCTCAAAAGGATGTTTCACCTCGTGATCGTCCTATTGATTCTCGAAGCCCTTCTGATGCTGATGAATGA 768 0.4714 MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGESRGFAFVRYKYADEAQKAVEKLDGRIVDGREIMVQFAKYGPNAEKIQKGRIVESSSKPKGRSRSRSPRPRSRDEYKDRDYRRRSRSRSRERYDRDKYRERERDHRRRQSRSLSASPDYHKDHKRGRYDEERRARSRSYDSESPARHGASPSPHRSPSQHKKSSQDGQHDERNNNDQSPAQKDVSPRDRPIDSRSPSDADE 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1248 255 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 242 - -
Glsi08g1248 255 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Glsi08g1248 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Glsi08g1248 255 MobiDBLite consensus disorder prediction 122 196 - -
Glsi08g1248 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 87 IPR000504 GO:0003723
Glsi08g1248 255 SMART rrm1_1 17 90 IPR000504 GO:0003723
Glsi08g1248 255 MobiDBLite consensus disorder prediction 213 255 - -
Glsi08g1248 255 CDD RRM_SRSF2_SRSF8 18 90 - -
Glsi08g1248 255 Gene3D - 4 105 IPR012677 -
Glsi08g1248 255 MobiDBLite consensus disorder prediction 102 255 - -
Glsi08g1248 255 SUPERFAMILY RNA-binding domain, RBD 8 103 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1248 Glsi-ChrGlsi08 9112281 9116003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1248 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 7.31e-10 56.6