Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1242 ATGACGAACCAAAATCTGGTTGTTCCTGATGTCAAATCACGTATTAACACGTTTATTGAGATGGCTGTGTCCGTTTCAAACTCAACTCTGTTGCCCGGCCCAGCAGTGCCCGAATCACTGGCTGTTCTTGGTGGGATTAAAAAGCTAATGAAGAGGCTTGAGGATGGAGGAGGGAAAGGAGGAGCTAAAGTTAACGCTTGGATTGATTCAATGAGAGCTTCCTCTCCAACTCGACTTAAATCCACCGTCCCTACTTCTGAATCCCAGAGCATAAGTTCTTGGAGTCTTCATCATCCTTCAGCTTTGAACATGTTTGATCAGATACTATATAGATCGAGAGGAAAGCAAATTGTAATCTTTCTTGACTACGATGGAACTCTCTCCCCAATTGTTGCAGACCCAGATAAAGCATTCATGACTAAAAAGATGAGAGCGACGGTAAAGGACATAGCAAGACATTTTCCCACAGCCATCGTTAGCGGGAGGTGCAGAGACAAGGTGTACAAGTTTGTAAGATTGGCAGAGCTGTACTACGCAGGTAGCCATGGGATGGACATTAAGGGACCAGCAAAAAGGCGAAGTCCTAAGAAAGGTAACCAAGCAGTCCCCTTCCAACCTGCGAGCCACTTCTTGCCCATGATCAATGAGGTGTACAAGATCCTGCTAGAAAAAACAAAATCTGTCCCAGGGGCTAAGGTAGAAAATAACAAGTTTTGCTTGTCCGTGCACTTCCGTTGTGTTGACGAAAAGAGTTGGGCTGCACTGGCGGAGCAAGTTAGATTAGTGCTCAATAAATACCCAAAACTTAGGCTGACCGAAGGGAGAAAAGTGCTAGAGATCCGGCCAACCATAAAATGGGACAAGGGCAAAGCTCTCGAATTTTTGTTACAGTCGCTAGGGTTTGCCAATTCTAAGGACGTATTTCCCATCTATGTTGGTGATGACCGAACTGACGAGGATGCGTTTAAGGTTTTACGTAATAGAGGTCAAGGGATGGGAATTCTTGTTTCTAGAGTTGCAAAAGAAACATACGCTTCCTACACTTTACAAGACCCATCAGAGGCAAGTCCGATCCAATTGATTCATGTGGAGCGGTTTTTAAGGCGTTTGGTGGAGTCAAAAAGAAGAGTGTAG 1134 0.448 MTNQNLVVPDVKSRINTFIEMAVSVSNSTLLPGPAVPESLAVLGGIKKLMKRLEDGGGKGGAKVNAWIDSMRASSPTRLKSTVPTSESQSISSWSLHHPSALNMFDQILYRSRGKQIVIFLDYDGTLSPIVADPDKAFMTKKMRATVKDIARHFPTAIVSGRCRDKVYKFVRLAELYYAGSHGMDIKGPAKRRSPKKGNQAVPFQPASHFLPMINEVYKILLEKTKSVPGAKVENNKFCLSVHFRCVDEKSWAALAEQVRLVLNKYPKLRLTEGRKVLEIRPTIKWDKGKALEFLLQSLGFANSKDVFPIYVGDDRTDEDAFKVLRNRGQGMGILVSRVAKETYASYTLQDPSEASPIQLIHVERFLRRLVESKRRV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1242 377 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 57 375 IPR044651 GO:0004805|GO:0005992
Glsi08g1242 377 Gene3D - 119 349 IPR023214 -
Glsi08g1242 377 Gene3D - 207 283 - -
Glsi08g1242 377 FunFam Trehalose 6-phosphate phosphatase 207 283 - -
Glsi08g1242 377 NCBIfam HAD-IIB family hydrolase 119 327 IPR006379 -
Glsi08g1242 377 FunFam Trehalose 6-phosphate phosphatase 117 203 - -
Glsi08g1242 377 SUPERFAMILY HAD-like 118 354 IPR036412 -
Glsi08g1242 377 FunFam Trehalose 6-phosphate phosphatase 213 377 - -
Glsi08g1242 377 NCBIfam trehalose-phosphatase 115 354 IPR003337 GO:0003824|GO:0005992
Glsi08g1242 377 Pfam Trehalose-phosphatase 120 353 IPR003337 GO:0003824|GO:0005992
Glsi08g1242 377 CDD HAD_TPP 118 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1242 Glsi-ChrGlsi08 9005958 9007993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1242 109 355 Trehalose Biosynthesis Gene Families AT1G70290 26.562 1.63e-08 54.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1084 10 7269477 7271515 Glsi08g1242 08 9005958 9007993 CCT
Glsi08g1242 08 9005958 9007993 Glsi08g1242 08 9005958 9007993 ECH