Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1238 ATGGCAGCTACAATGAATTTCTACGGTAGCACGCAACTTCACTCGGATCCCTTCAGGGGTGAGCTGATGGAAGTTCTTGAACCTTTTATGAAAAGTGCTTCCACAACTCCCTCTGCTTCAGCAGTCTCATCTCCTTCAAATTTATCTCTACCTTCTACTTCTTACTCTCCTTCAGTCCCTACACAGCCCACTTTGTTTGCAGATGGTTGCTCCACATCGAAGACCCATGTATTTGCCAACGGGTTATCGGAAAACCAAAACTTGATCGGTTTTGGGCAACCAAGTTCTGTCCTTGGGCTCAACCACCTAACCCCATCTCAGATTAACCAGATCCAAGCTCAGATCCAGCTCCAGAATCAGCAGAACCTGTCCTGGCAGCAAAATATCCTCAGGTTCCTAAGTCCCAAACCTATTCCGATGAAGCAAATGGGTACGCCTTCTAAACCCACTAAGCTCTACAGAGGGGTCAGACAACGGCATTGGGGAAAATGGGTAGCCGAGATCAGACTCCCGAAGAACCGCTCCCGGCTCTGGCTCGGTACTTTCGACACTGCCGAAGAAGCTGCCCTGGCCTACGACAAGGCCGCTTACAAGCTCAGAGGTGACTTTGCTAGGCTCAACTTCCCCAACCTGCGACACCAGGGTTCCTGTGTTGGGGGTGAATTCGGCGAGTACAAGCCTCTACATTCCTCGGTGGATGCAAAGCTTCAAGCAATTTGCGTAAGCTTGGCCGATGTGCAGAAACAGGGGAAATCAGAGAAGTCAATGAGCTCTACCAAGAGGTCGGGAGCGCGATCGAAATTGGGTTCAACGAAGGCTCAGCCACGGACGGTGACACGCTCGGAGGAGCAGTCGGTGTTGGGCGATGTTGATTTGAAGGTGGCGGAGAACTGTTGCAAGGTGAAAAATTGCTCATCTCCGGTGATGACGGAGAGCGAGGGATCTGCAGGTTCTTCCCCTTTATCAGATCTGACTTTCGCCGATGTCACAGATCCAGAATGGGAAAGTGGTATAGACAATTTTAATCTTCCCAAGTACCCTTCTAATGAGATCGATTGGGCATCTCTGTGA 1071 0.5033 MAATMNFYGSTQLHSDPFRGELMEVLEPFMKSASTTPSASAVSSPSNLSLPSTSYSPSVPTQPTLFADGCSTSKTHVFANGLSENQNLIGFGQPSSVLGLNHLTPSQINQIQAQIQLQNQQNLSWQQNILRFLSPKPIPMKQMGTPSKPTKLYRGVRQRHWGKWVAEIRLPKNRSRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSCVGGEFGEYKPLHSSVDAKLQAICVSLADVQKQGKSEKSMSSTKRSGARSKLGSTKAQPRTVTRSEEQSVLGDVDLKVAENCCKVKNCSSPVMTESEGSAGSSPLSDLTFADVTDPEWESGIDNFNLPKYPSNEIDWASL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1238 356 MobiDBLite consensus disorder prediction 261 284 - -
Glsi08g1238 356 SUPERFAMILY DNA-binding domain 152 210 IPR016177 GO:0003677
Glsi08g1238 356 PRINTS Ethylene responsive element binding protein signature 175 191 IPR001471 GO:0003700|GO:0006355
Glsi08g1238 356 PRINTS Ethylene responsive element binding protein signature 153 164 IPR001471 GO:0003700|GO:0006355
Glsi08g1238 356 MobiDBLite consensus disorder prediction 35 55 - -
Glsi08g1238 356 Coils Coil 108 128 - -
Glsi08g1238 356 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 356 - -
Glsi08g1238 356 MobiDBLite consensus disorder prediction 251 284 - -
Glsi08g1238 356 Gene3D AP2/ERF domain 152 210 IPR036955 GO:0003700|GO:0006355
Glsi08g1238 356 ProSiteProfiles AP2/ERF domain profile. 152 209 IPR001471 GO:0003700|GO:0006355
Glsi08g1238 356 SMART rav1_2 152 215 IPR001471 GO:0003700|GO:0006355
Glsi08g1238 356 CDD AP2 151 211 IPR001471 GO:0003700|GO:0006355
Glsi08g1238 356 FunFam Ethylene-responsive transcription factor 2 151 210 - -
Glsi08g1238 356 Pfam AP2 domain 153 201 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1238 Glsi-ChrGlsi08 8987086 8988156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1238 1 356 AP2-EREBP Transcription Factor Family AT1G78080 52.561 4.14e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi08g1238 AP2 1.1e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1088 10 7291024 7292076 Glsi08g1238 08 8987086 8988156 CCT
Glsi08g1238 08 8987086 8988156 Glsi08g1238 08 8987086 8988156 ECH