Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1226 ATGTCTTCAATGGATCATTCACCTGATGAAACCCATGAAACAAAAGAGATAGATACTAGAAGTTTGTCATCTTCTCAAAGTCAGGCACCATACGTACACAAAGTGGGAATTCCTCCAAGACAGAACCTGTTCAAGGAATTCCTATCCACTGTAAAAGAAACATTCTTTGCTGATGATCCTCTACGTTCTTTCAAAGATCAGACAAAATCTCGGAAATTCATCCTCGGCACTGAGGCCATATTCCCTATACTTAATTGGGGGAGAAATTACAACCTTACCAAATTTAGAGGGGATATTATAGCTGGTCTAACTATTGCAAGTCTCTGCATTCCTCAGGACATTGGATACGCAAAGCTTGCTAATTTAGCTCCTGAGTATGGACTTTACTCCAGTTTTGTTCCACCACTGATTTATACTATCATGGGTAGTTCTCGTGATATTGCCATAGGACCAGTGGCTGTGGTTTCTCTCTTGCTAGGGACCTTACTTCGGAATGAGATTGATCCTGTTGCACATCCAGCAGAATATCGGAGACTTGCTTTCACAGCAACTTTTTTTGCAGGGATTACCCAAGCAACTCTTGGGGTTTTCAGGTTAGGTTTCTTGATTGACTTCCTGTCCCATGCTGCTATTGTTGGTTTTATGGCGGGAGCTGCCATCACAATTGCCCTTCAACAGCTTAAGGGATTCCTTGGCATCAAAAAGTTCACAAAGAAAACTGATATTGTCTCTGTAATGCATTCAGTATTCTCAACAAGCCATCATGGTTGGAACTGGCAGACTTTAGTCCTTGGTGCAAGCTTTTTGGCCTTTCTTCTGCTGGCTAAATACATTGGAAAAAAGAACAAGAAGTTCTTCTGGGTGCCAGCAATTGCCCCATTGATATCTGTTGTACTCTCCACTTTTCTTGTGTACTTAACCCGTGCAGACAAGTATGGTGTTGAAATTGTAAATCATATAGACAAAGGGATCAATCCTTCCTCTGTTAAAGAAATCTATTTCAGTGGTGACTACCTTGGGAAAGGTTTCAGAATTGGCATCGTGGCTGGCATGATAGCATTGACAGAAGCCATAGCAATTGGAAGAACATTTGCTTCTATGAAAGACTATCAACTGGATGGGAACAAAGAAATGGTGGCGTTAGGAACTATGAATATTGTTGGTTCAATGACTTCTTGCTATGTGGCAACAGGTTCTTTTTCTCGGTCGGCGGTAAATTTCATGGCTGGCTGCCAAACTGCGGTCTCTAATATTGTGATGGCCGTCGTTGTATTCTTAACCCTTCAATTCCTTACACCTCTTTTTAAGTTTACTCCGAATGCCATTCTTGCTGCCATCATCATATCTGCTGTCATTGGTCTTGTCGACTATCAGGCAGCAATTTTGATATGGAAGATTGATAAATTTGATTTTGTTGCTTGCATGGGAGCCTTTTTTGGGGTTGTTTTTTCCTCGGTTGAGATAGGACTTCTAATTGCTGTCTCTATATCCTTTGCTAAAATCCTACTACAAGTCACCAGGCCACGAACAGCTATTCTGGGGAAGATCCCTAGGACAACTGTCTTTAGAAATACTCAACAATACCCAGAAGCCACAAAGGTTCCTGGTGTGCTGATTGTAAGAGTTGATTCTGCAATATACTTTTCCAACTCCAATTACGTTAAAGAAAGGATATTGAGATGGTTGATGGATGAGGAAGAACGAGCGAAAGAAGACTACCAAACAGGAATCCAATATTTGATAGTTGAAATGTCACCCGTTACTGACATTGACACCAGTGGCATCCGTGCCTTTGAAGAGTTATACAGAAGTCTTCAAAAGAGAGATGTTCAGCTTGTTCTGGCAAACCCAGGCCCCCTAGTGATAGACAAGCTTCACACCTCCAATTTCGCAAATCTGATAGGCGAGGACAAGATCTACCTCACAGTTGCAGATGCCGTTGCATACTGTTCTCCAAAGCTGGTGCTCTCTCAAACAGTCAATTCAATGGCGCTGGAGTACTTTCCTGCCTTCCGCCATATCCTCCGACGTGTCTACTGGCTTACTCAGTCTCCTCCACCACGCCCAGCTAGTGCTTTACGGTTAAACCCTTCTATTCGTTCCTATTGTCTTTTTTCCTCGAAACCCACAACCCCAACCTCCGAAAAACCCCGTGCCACTTCTAAAGAGAATTACACGTTGGTTCTGAAGAAAGATGAGCGCTTGGCGGAGCCTGTTGGTGCTGCTCATGAGCCTGGGCGTGTTCAGAATGCGAGCACAATTGTGGCTATTGTCACATCCTTGGGGGGTCCCCCTGGTGCTGTGGGAATCGTTCGACTTTCTGGGCCTTCTGCGGTGGCTATTGTTGATCGAGTATTTCGACCTGTGAGGAAAAGGAAGAGGACGTGGCAGGCCACGAGCCATGTTGTTGAGTATGGTGTCGTACTAGACTCGGATGGACAAGTGATCGATGAGGTTTTAGCAGTACCCATGTTAGCTCCGAGGTCTTACACTCGCGAGGACGTGGTTGAGCTTCAATGTCATGGGAGTGAAGTGTGCCTACGCCGTGTATTAAGAACTTGTGTAGAAGCTGGAGCAAGACTTGCTGAACCAGGTGAGTTTACTCTTCGTGCTTTTCTAAATGGTCGATTAGATCTATCCCAAGCTGAAAATGTTGGAAGATTAATAACAGCCAAGTCTGTGGCTGCTGCAGATGCAGCACTGGCAGGAATCCAGGGTGGTTTCTCTTCTCTTGTCAGATCACTAAGAATACAGTGCATTGAGCTACTTACTGAGATTGAAGCTCGTTTAGATTTTGATGATGAGATGCCACCTCTAGATTTGAATCTAATCATGAATAAAATACACACCATGTCACAAGATGTTCAAAATGCATTGGAGACGGCCAATTATGACAAGCTTCTTCAATCTGGATTACAGATAGCAATTGTTGGCCGTCCAAATGTTGGCAAATCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGGGCCATAGTTACTGAAATTGCTGGAACCACCCGGGATGTAATTGAAGCAAGTGTCAGTGTCAATGGCATTCCTATAACCCTTCTTGATACTGCAGGAATCAGGGATACTGATGACATTGTAGAAAAGATTGGTGTGGAGAGATCTGAAGCAGTTGCTATGGGTGCTGATTTGATTATCATGACTGTCAGTGCTATTGAAGGGTGGACTTTTGAAGACACCAAACTTCTAGAAAGGATTCAATCTACTAAGAGATCAATGGGATCTTCCACCCCGGCAATCCTTGTGGTCAACAAGATAGACTGTGCTTCTTGTGCCGAGACTGAATGGGTCAAAGTGCATGACAATTTTTTCAGTAAACACGTGTTTACATGTGCTGTCACTGGTGAAGGATTGCAAGACTTGGAGAGCGCAGTATTAGAGATGGTGGGTCTTAACAGCATTTCTGCCGGGGGACGTAGGTGGACTGTTAATCAGAGACAATGTGAACAACTTGTTCGGACGAAGGAAGCTTTTGTAAGACTAAAATCATCGATAGAGGAGAAACTACCTCTGGATTTTTGGACGATTGATTTGAGGGATGCCGCATTGGCACTTGGGCAGATAAGTGGAGAAGATGTGTCGGAAGAGGTTTTATCCAATATATTTGGCAAGTTCTGTATTGGTAAATAG 3657 0.4359 MSSMDHSPDETHETKEIDTRSLSSSQSQAPYVHKVGIPPRQNLFKEFLSTVKETFFADDPLRSFKDQTKSRKFILGTEAIFPILNWGRNYNLTKFRGDIIAGLTIASLCIPQDIGYAKLANLAPEYGLYSSFVPPLIYTIMGSSRDIAIGPVAVVSLLLGTLLRNEIDPVAHPAEYRRLAFTATFFAGITQATLGVFRLGFLIDFLSHAAIVGFMAGAAITIALQQLKGFLGIKKFTKKTDIVSVMHSVFSTSHHGWNWQTLVLGASFLAFLLLAKYIGKKNKKFFWVPAIAPLISVVLSTFLVYLTRADKYGVEIVNHIDKGINPSSVKEIYFSGDYLGKGFRIGIVAGMIALTEAIAIGRTFASMKDYQLDGNKEMVALGTMNIVGSMTSCYVATGSFSRSAVNFMAGCQTAVSNIVMAVVVFLTLQFLTPLFKFTPNAILAAIIISAVIGLVDYQAAILIWKIDKFDFVACMGAFFGVVFSSVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVFRNTQQYPEATKVPGVLIVRVDSAIYFSNSNYVKERILRWLMDEEERAKEDYQTGIQYLIVEMSPVTDIDTSGIRAFEELYRSLQKRDVQLVLANPGPLVIDKLHTSNFANLIGEDKIYLTVADAVAYCSPKLVLSQTVNSMALEYFPAFRHILRRVYWLTQSPPPRPASALRLNPSIRSYCLFSSKPTTPTSEKPRATSKENYTLVLKKDERLAEPVGAAHEPGRVQNASTIVAIVTSLGGPPGAVGIVRLSGPSAVAIVDRVFRPVRKRKRTWQATSHVVEYGVVLDSDGQVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCVEAGARLAEPGEFTLRAFLNGRLDLSQAENVGRLITAKSVAAADAALAGIQGGFSSLVRSLRIQCIELLTEIEARLDFDDEMPPLDLNLIMNKIHTMSQDVQNALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVSVNGIPITLLDTAGIRDTDDIVEKIGVERSEAVAMGADLIIMTVSAIEGWTFEDTKLLERIQSTKRSMGSSTPAILVVNKIDCASCAETEWVKVHDNFFSKHVFTCAVTGEGLQDLESAVLEMVGLNSISAGGRRWTVNQRQCEQLVRTKEAFVRLKSSIEEKLPLDFWTIDLRDAALALGQISGEDVSEEVLSNIFGKFCIGK 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1226 1218 ProSiteProfiles STAS domain profile. 527 650 IPR002645 -
Glsi08g1226 1218 MobiDBLite consensus disorder prediction 1 29 - -
Glsi08g1226 1218 Pfam 50S ribosome-binding GTPase 973 1094 IPR006073 GO:0005525
Glsi08g1226 1218 Gene3D tRNA modification GTPase MnmE domain 2 877 1218 IPR027368 -
Glsi08g1226 1218 CDD STAS_SulP_like_sulfate_transporter 528 643 - -
Glsi08g1226 1218 SUPERFAMILY SpoIIaa-like 529 651 IPR036513 -
Glsi08g1226 1218 NCBIfam tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 766 1218 IPR004520 GO:0003924|GO:0005525|GO:0006400
Glsi08g1226 1218 Gene3D - 972 1146 IPR027417 -
Glsi08g1226 1218 NCBIfam small GTP-binding protein domain 972 1101 IPR005225 GO:0005525
Glsi08g1226 1218 CDD trmE 969 1139 IPR031168 -
Glsi08g1226 1218 PANTHER SULFATE TRANSPORTER 42 653 IPR001902 GO:0016020|GO:0055085
Glsi08g1226 1218 NCBIfam sulfate permease 82 646 IPR001902 GO:0016020|GO:0055085
Glsi08g1226 1218 Pfam GTP-binding protein TrmE N-terminus 753 876 IPR018948 -
Glsi08g1226 1218 Hamap tRNA modification GTPase MnmE [mnmE]. 752 1218 IPR004520 GO:0003924|GO:0005525|GO:0006400
Glsi08g1226 1218 FunFam tRNA modification GTPase MnmE 972 1146 - -
Glsi08g1226 1218 CDD TrmE_N 752 875 IPR018948 -
Glsi08g1226 1218 Gene3D Probable tRNA modification gtpase trme; domain 1 741 876 IPR027266 GO:0005515
Glsi08g1226 1218 FunFam tRNA modification GTPase MnmE 748 876 - -
Glsi08g1226 1218 Pfam Sulfate permease family 95 475 IPR011547 GO:0016020
Glsi08g1226 1218 Pfam STAS domain 528 646 IPR002645 -
Glsi08g1226 1218 Pfam MnmE helical domain 879 1215 IPR025867 -
Glsi08g1226 1218 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 971 1139 IPR031168 -
Glsi08g1226 1218 FunFam Sulfate transporter 31 507 653 - -
Glsi08g1226 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 829 1134 IPR027417 -
Glsi08g1226 1218 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271|GO:0008272
Glsi08g1226 1218 Gene3D STAS domain 507 653 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1226 Glsi-ChrGlsi08 8892355 8903113 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1226 1 654 Inorganic Solute Cotransporters AT1G22150 75.535 0.0 999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1226 08 8892355 8903113 Glsi08g1226 08 8892355 8903113 ECH