Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1212 ATGACTGAGCGCCTGTGGCCCTCCATCAAATTGGGAGGGACAGATCGGACGCCTGTATGGAATTTGACGGATTCTGAAGTGGGACCGTTTCCTTACGTGGAATCATTTCTGGGACTTGTACAAAAGTTGGTAGAAGTGCTAGCTTCACTAACTGCCGTCAGATACAGACCGTGGGAAGGTAACGATGTTAGCAAGTTGAAGCTTCAAAGCAGAGGAAAAAGCAAAAGAAAAGCAACTAAGCCGGTGAGTTGTCAAATATATTCTAAGCGTCAATTGGGTGTTTACTGGACTAAATTTGGAGCTTGCAGGTTCTATCAAGCTAAGTGTATGAGCTCTCCATCAACTCAGCTCCTCATCTCAAAAAGGATGGGCATATATGAACCATTCCCGCAAGTTAGCATGTGGGGGGACAGCTTTAAAGTTGATAGTACCCTTAACTCAGGTGCTTCCCCAATGTTCCTGGTGAACACTCCCACAGAGAACAAGTCTGAATATATTCCTCATGAATCAAGTGGACCTTCTGGAGATGATCAAGAGACCAATAAAGCTGTTAGTAAGGTGCTAAGACGCTTAGCTCAAAATCGTGAAGCTGCTCGGAAAAGTCGTCTGCGGAAAAAGGCATATGTCCAACAATTAGAAACAAGCCGTTTGAAACTCATGCAATTGGAGCTGGAGCTTGAGAAAGCCAGAAAGCAGGGTTTTGGTATGAACAGTGCATTAGATGCTGGAACTGTAAACCCAGGGATTGCAGCTTTTGAGATGAAATATGGCCAATGGGTTGAAGAGCAACATAGACAGAATGCAGAACTTAGAAATGCATTACAAGCTCATTCCTCTGATATACAGCTTCATCTCCTTGTTAAGAATGGGTTGAACCATTACTTAAATCTTTTCAGGATGAAAGCAGATGCTGCAAAGGCCGATGTCTTCTATTTAATCTCTGGTGTGTGGAAAGCATCAGTAGAACGCATTTTTCTTTGGATTGGAGGTTCCCGCCCATCACAGCTTCTAAACATCATCGTGCCACAACTGGATCCATTGAGTGATGAGCAGATAGTGAGTTTTAAGAAACTTCAGCTATCTTCTCAGCAAGCTGAAGATGCTCTTTCACAAGGACTGGATAAACTGCAGCAGAGTCTGGTGCTGAACATAGCAGCTTATCCATTGGAGGTAGGAAACTTTGGGTTTCAGATGGCTTCTGCCATGGAGAAAATTGAAGCACTAGAGGGTTTTGTAAACCAGGCAGATCACCTTCGGCAACAAACCCTGCAACATATGTCTCGCATACTCACAACCCAGCAGGCTGCTCAAGGCTTGCTGGCTCTGGGGGAATACTTTCTCCGTCTCCGTGCTCTTAGTTCTATTTGGTCTGCTCGTCCATGTGATCCTCCATACCAAACTTAG 1404 0.4459 MTERLWPSIKLGGTDRTPVWNLTDSEVGPFPYVESFLGLVQKLVEVLASLTAVRYRPWEGNDVSKLKLQSRGKSKRKATKPVSCQIYSKRQLGVYWTKFGACRFYQAKCMSSPSTQLLISKRMGIYEPFPQVSMWGDSFKVDSTLNSGASPMFLVNTPTENKSEYIPHESSGPSGDDQETNKAVSKVLRRLAQNREAARKSRLRKKAYVQQLETSRLKLMQLELELEKARKQGFGMNSALDAGTVNPGIAAFEMKYGQWVEEQHRQNAELRNALQAHSSDIQLHLLVKNGLNHYLNLFRMKADAAKADVFYLISGVWKASVERIFLWIGGSRPSQLLNIIVPQLDPLSDEQIVSFKKLQLSSQQAEDALSQGLDKLQQSLVLNIAAYPLEVGNFGFQMASAMEKIEALEGFVNQADHLRQQTLQHMSRILTTQQAAQGLLALGEYFLRLRALSSIWSARPCDPPYQT 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1212 467 PANTHER TRANSCRIPTION FACTOR TGA9 111 461 - -
Glsi08g1212 467 Coils Coil 205 232 - -
Glsi08g1212 467 Pfam Seed dormancy control 268 341 IPR025422 GO:0006351|GO:0043565
Glsi08g1212 467 SUPERFAMILY Leucine zipper domain 186 223 IPR046347 GO:0003700|GO:0006355
Glsi08g1212 467 MobiDBLite consensus disorder prediction 161 182 - -
Glsi08g1212 467 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 189 204 IPR004827 GO:0003700|GO:0006355
Glsi08g1212 467 Coils Coil 260 280 - -
Glsi08g1212 467 SMART brlzneu 182 242 IPR004827 GO:0003700|GO:0006355
Glsi08g1212 467 Gene3D - 185 239 - -
Glsi08g1212 467 MobiDBLite consensus disorder prediction 161 181 - -
Glsi08g1212 467 Pfam bZIP transcription factor 186 218 IPR004827 GO:0003700|GO:0006355
Glsi08g1212 467 FunFam BZIP family transcription factor 185 234 - -
Glsi08g1212 467 ProSiteProfiles DOG1 domain profile. 249 459 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1212 Glsi-ChrGlsi08 8792727 8795895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1212 111 463 Calmodulin-binding Proteins AT1G77920 57.065 1.13e-136 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Glsi08g1212 DOG1 3.8e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1212 08 8792727 8795895 Glsi08g1212 08 8792727 8795895 ECH