Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1204 ATGCGTCCCTCAAAGTCACGGCACCTTCCCCCGACGCCGGCGCAGAATGGTCGCCTGGACCCGAAAATCTGGCTAGCATGCGCTGGTCTCTCCGTTCAAATCCCCGCTCTTCATTCTAGGGCTTATTACTTCCCTCAGGGCCATCTCGAGCACGCCTCTTCGTCTCCTCAATACCTCTCCCCTCTCGTCCTTTCCAGGCCCTTCATTCCCTGTCGCATCTCCGCTCTTCACTTTCTTGCTGATCCTGTTACCGATGAGGTCTTTGCTAAACTTCTCCTCCATCCTATCAATGATCACCCCCCTCCTCACATCGCCGATTCTGCCCAAGCGCCCGACAATGACACGATCGTGACCTTTGCGAAGATTCTGACGCCTTCTGACGCCAACAATGGCGGCGGATTTTCTGTTCCTAGGTACTGTGCTGAATCCATCTTCCCGCCGCTGAACTTCCAGGTCGACCGACCCACCCAGACATTGTTCGTGACTGATGTTCACGGTAGCGTCTGGGATTTTCGCCACATTTATCGGGGCACGCCCAAGCGGCACTTACTCACTACTGGTTGGAGCAAGTTTGTCAATCACAAGAAGTTGGTTGCTGGTGATTCCGTGGTTTTCATGAAGAATTCCAGAGGGGAGGTGTTCGTTGGAATTCGCAGAGCTGTGCGACGTACTGCAGGAAACGGTGGCGATTGCGCCGCACGGGCGCCCCAGAGCAGCGGGGTGAGAACTATGCCTGAGGTTGAGCAGCAGGAAGAGGGATACATAGGTTCCAGAGAGGGAGAAGGGTTTTCGAGGAACGGGAGGGGGAAATTGTCAGCGAAGGCAGTTGTGGATGCAGCAGAATCCGCAGCACAGAATATGCCGTTTGAGGTTGTGTATTATCCAAGGGTGGGCTGGTCGGACTTTGTGGTGAAGGCGGAAGTTGTGGAGCAAGCTCTGAACGTCGAATGGACTCCCGGAATGAGAGTCAAAATGTCTGTGGAGACAGAGGATTCGTCCAGGTCGACCTGCTTTCAGGGGACGGTCTCTTCTGCATCTGCTCCTGTTAATGGCCCTTGGCGTGGTTCTCCTTGGCGTATGCTTCAGGTTACATGGGATGAACCTGAAGTCTTGCAATATGCAAAGCAAGTAAGCCCTTGGCAGGTTGAAACTGTTCCCCCCACACTTACTCATCATACAGCATTCCCTCCCGCAAAAAAGTTTAGACCTGCTCAGGGTTCTGAGGTGCCAATTGAGAGAGAGGGAGACCCCTTCTTTTCTACATCGGGATTCGCCAATTCAACAGTGAGACATTTGAATCCATCATTGTTGAGTTACAATACTTCTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGTATCAAGTTTTTCCAACTCAAAAAGTGATAATTCTCATCCGGGCATTGGTAATTCCTTTGGGAACAACCTGGTGCCAAAGGTGAAAACTGTGTCAACAGAGCTAAACATTGGCAGTTCTCAATCTGAAAACTTGTCACCAGATAGCCAGAGTAGTTTGCGTTCCTTTGGCACGGAATTTGCTGGGACCCAGAGCTGCAACTCAGCAAAACTTGGTGCTGGTTCATTTCAGCTATTTGGTAAGCTCATTCAACTGGAACAGCCTGTGGAGAGTGGTTTGCATTCTGCCGGTTGCACAGGAGATGATAGCAGTAACAGCTGTCCTGAAACTGAAGGCATTGACAACCCACGGAATCATTCTGACTCGTAA 1734 0.5138 MRPSKSRHLPPTPAQNGRLDPKIWLACAGLSVQIPALHSRAYYFPQGHLEHASSSPQYLSPLVLSRPFIPCRISALHFLADPVTDEVFAKLLLHPINDHPPPHIADSAQAPDNDTIVTFAKILTPSDANNGGGFSVPRYCAESIFPPLNFQVDRPTQTLFVTDVHGSVWDFRHIYRGTPKRHLLTTGWSKFVNHKKLVAGDSVVFMKNSRGEVFVGIRRAVRRTAGNGGDCAARAPQSSGVRTMPEVEQQEEGYIGSREGEGFSRNGRGKLSAKAVVDAAESAAQNMPFEVVYYPRVGWSDFVVKAEVVEQALNVEWTPGMRVKMSVETEDSSRSTCFQGTVSSASAPVNGPWRGSPWRMLQVTWDEPEVLQYAKQVSPWQVETVPPTLTHHTAFPPAKKFRPAQGSEVPIEREGDPFFSTSGFANSTVRHLNPSLLSYNTSPAGMQGARHDLFSVSSFSNSKSDNSHPGIGNSFGNNLVPKVKTVSTELNIGSSQSENLSPDSQSSLRSFGTEFAGTQSCNSAKLGAGSFQLFGKLIQLEQPVESGLHSAGCTGDDSSNSCPETEGIDNPRNHSDS 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1204 577 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677
Glsi08g1204 577 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 550 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi08g1204 577 FunFam Auxin response factor 117 221 - -
Glsi08g1204 577 MobiDBLite consensus disorder prediction 552 568 - -
Glsi08g1204 577 MobiDBLite consensus disorder prediction 391 414 - -
Glsi08g1204 577 SUPERFAMILY DNA-binding pseudobarrel domain 106 231 IPR015300 -
Glsi08g1204 577 CDD B3_DNA 119 219 IPR003340 GO:0003677
Glsi08g1204 577 Gene3D - 116 221 IPR015300 -
Glsi08g1204 577 SMART B3_2 119 221 IPR003340 GO:0003677
Glsi08g1204 577 Pfam Auxin response factor 279 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi08g1204 577 MobiDBLite consensus disorder prediction 226 261 - -
Glsi08g1204 577 MobiDBLite consensus disorder prediction 546 577 - -
Glsi08g1204 577 Gene3D - 317 388 - -
Glsi08g1204 577 Pfam B3 DNA binding domain 119 220 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1204 Glsi-ChrGlsi08 8755888 8759138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1204 18 566 B3 DNA Binding Superfamily AT1G77850 49.464 4.92e-176 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi08g1204 B3 9.4e-23 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1121 10 7518215 7525365 Glsi08g1204 08 8755888 8759138 CCT
Glsi08g1204 08 8755888 8759138 Glsi08g1204 08 8755888 8759138 ECH