Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1196 ATGGGTTCGCTGGAGACACCGACGAGCGCGGTGCGCGGTTCTGCTCCTGTCACAGGTAACGGAAAAGCTCTCGCTGTCGATGGGGCACACTTACAGTCGGCGGAGCATGTCGAGATGGCGTCGGAGAAGACGCTTGAATCCGACGCGTCAAAGAAGCGGAGAACGTCTATGCTTCCTCTGGAGGTTGGTACTAGGGTCATGTGCCGTTGGAGGGACGGAAAGTTTCACCCTGTGAAAGTCATTGAACGGCGCAAGATGCAGACGGGTGGCCCCAATGATTACGAGTATTACGTCCATTACACTGAGTTCAATAGGAGGCTTGATGAGTGGGTGAAGCTTGAACAACTTGATCTTGATTCAGTGGAGGCTGTTGTAGATGAGAAAGTGGAGGATAAGGTGACAAGCTTGAAGATGACACGCCACCAGAAGAGGAAGATTGATGAGACACATGTAGAGGGCCATGAGGAACTTGATGCTGCCAGCTTGCGAGAGCATGAGGAATTTACAAAAGTGAAAAATATAGCTACTATTGAACTTGGAAGATATGAGATAGAGACATGGTACTTCTCCCCCTTCCCACCAGAATACAATGACTGTTTGAAGATGTACTTTTGTGAGTTTTGCCTCAATTTCATGAAGCGCAAAGAACAACTTCAGAGGCATATGAGGAAGTGCGATCTTAAGCATCCCCCTGGTGATGAGATATACAGAAGTGGTACACTGTCAATGTTTGAGATTGATGGCAAAAAGAACAAGGTTTATGGGCAGAATCTTTGTTATCTGGCAAAGCTGTTTCTTGATCACAAGACCCTCTATTATGATGTTGACCTGTTTCTGTTCTATGTTTTATGTGAATGCGATGATCGAGGATGCCATATGGTTGGCTATTTCTCCAAGGAAAAACATTCAGAGGAATCTTACAATTTGGCATGTATTCTCACCCTTCCACCCTACCAAAGGAAAGGCTATGGAAAATTTCTAATAGCTTTCTCATATGAACTTTCCAAGAAGGAGGGAAAAGTTGGCACACCAGAAAGACCCCTTTCTGACCTGGGATTGCTGAGCTACAGAGGATATTGGACCAGGGTTCTTTTAGACATTTTAAAAAAGCACAAGGGTAATATATCCATCAAGGAGCTGAGTGACATGACTGCCATTAAAGCTGAAGATATTTTGACCACCCTGCAGAGCCTAGAATTGATTCAATACAGGAAAGGACAGCATGTTATATGTGCAGATCCGAAAGTTTTGGATCGTCATCTTAAAGCTGCTGGCAGAGGTGGTCTGGAGGTCGATGTTAGCAAATTGATCTGGACTCCTTATAAAGAACAAGGTTGA 1338 0.4492 MGSLETPTSAVRGSAPVTGNGKALAVDGAHLQSAEHVEMASEKTLESDASKKRRTSMLPLEVGTRVMCRWRDGKFHPVKVIERRKMQTGGPNDYEYYVHYTEFNRRLDEWVKLEQLDLDSVEAVVDEKVEDKVTSLKMTRHQKRKIDETHVEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDCLKMYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRSGTLSMFEIDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLIAFSYELSKKEGKVGTPERPLSDLGLLSYRGYWTRVLLDILKKHKGNISIKELSDMTAIKAEDILTTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLEVDVSKLIWTPYKEQG 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1196 445 MobiDBLite consensus disorder prediction 1 15 - -
Glsi08g1196 445 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 170 441 IPR016181 -
Glsi08g1196 445 PANTHER HISTONE ACETYLTRANSFERASE 40 441 - -
Glsi08g1196 445 Gene3D - 170 226 - -
Glsi08g1196 445 FunFam Histone acetyltransferase 168 225 - -
Glsi08g1196 445 ProSiteProfiles MYST-type histone acetyltransferase (HAT) domain profile. 169 440 IPR002717 GO:0004402|GO:0006355|GO:0016573
Glsi08g1196 445 Pfam RNA binding activity-knot of a chromodomain 60 118 IPR025995 -
Glsi08g1196 445 MobiDBLite consensus disorder prediction 1 21 - -
Glsi08g1196 445 SMART chromo_7 74 133 IPR000953 -
Glsi08g1196 445 Pfam MOZ/SAS family 230 407 IPR002717 GO:0004402|GO:0006355|GO:0016573
Glsi08g1196 445 SUPERFAMILY Chromo domain-like 52 170 IPR016197 -
Glsi08g1196 445 FunFam Histone acetyltransferase 348 427 - -
Glsi08g1196 445 CDD CBD_MOF_like 63 132 - -
Glsi08g1196 445 Pfam MYST family zinc finger domain 171 225 IPR040706 -
Glsi08g1196 445 Gene3D - 228 440 - -
Glsi08g1196 445 CDD NAT_SF 281 339 - -
Glsi08g1196 445 Gene3D - 348 428 IPR036388 -
Glsi08g1196 445 Gene3D - 38 169 - -
Glsi08g1196 445 FunFam Histone acetyltransferase 50 169 - -
Glsi08g1196 445 FunFam Histone acetyltransferase 228 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1196 Glsi-ChrGlsi08 8720979 8727131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1196 1 445 C2H2 Transcription Factor Family AT5G64610 84.944 0.0 796