Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1195 ATGATGGGTAGGGGTGCGGAAGGAGGTTGCGGCACCGAGGAGAGGCCTTGCCAGGTTTCGAGGGTTCCGGCCAAATTCCCGGCGACCCAACCGGGAAATTTTTATGACACCATACTAGAAATTGATCACTACTCGCAGGTAAGGAAAGCACTCAGTGAGCGCTCGCCTTTTGATGTTGCAGAAGAGACGTCGACATCAACTGTGGCCACTTTGCCTAGTGGGTTGGCAAACTTCTTAAACCGCCATTCTGATAGTCGGAGACGCCACAAGAAGTCTCATGCTGGCGCGGATAAGAAATCGTCTAGAGCATGCGAGAAGTCACGTAGTTCTATCTTTTGGGTTAAGACTGAGGAGTACTTTAGAGACTTAAGATTGTCGGATATCGACACCTTGTTGGAGGTATCATTGTCTATTAGTTCGGCTGCTTGGAAGTGTCTTTCTATTCCACTACTGAGAAATGCTTCGAGGCCTAATGTAGTTAGTAAAGAGAATGACAAGGGGACTGTTGAGAACGTAAACAGCGAGGTTGTGAAAAATGAGGACGGTGTCATGGAAATTAATAGCGTTGCAGCAGAAGTTTTGCCTCGGGACGACAAGGATCATGCTACTTCTGATTCATCTAGTAGTTTAGAATGGCTGTTAGGATGTAAAAATAAGATTTCTCTAACTTCTGAGCGCCCTTCAAAGAAAAGGAAGCTTTTAGGGGGTGAAGCTGGGTTGGAGAAAGTTTTAATTGCTAGTCCTTGTGATGGGGACTCATCCTTTTGCCATTATTGCCGCAGGGGAGACACCAGTAGAGAGTCCAATCAATTAATTGTCTGCCATATTTGTAAAGTTGCAGTTCATAAGAAGTGCTATGGTGTGCAAGATGCTGTAGACGAGTCTTGGTTGTGCTCCTGGTGCAAGCAAAAGGATTTCATTGGCGAAACAGTGAACCCATGTGTGCTTTGCCCAAAGAAGGGTGGTTTATATAGAGGATTTGAAGAAGATGGAGCCGGTTATGAATGTGGGAGGCGTCAAGGAAACCCGGAAAAAACCTCTGATTTGAAGTCATATGTCCGCTGTTTCAAGTCATTGGTCACATACTTCTGTAGTTGTCTGTTGCCACTAGATTTTGGGTATGTATGTTTCTTGCTTGCAGCTTGTAACTCTTTCCTGCTGGCTGGTGTTACAGGAACCTGCAGGACTTCTTTCCATCCTTTATGTGCAAGGGAAACTAGACACAGGATGGAGGTTTGGGCAAAAAATGGCTATGACAATGTTGAGTTGCGGGCTTTTTGCTCCAAGCACTCAGATTTACAAGAGAACAACAGAATCTTGCCATCAAGTGGCTCTGTAGCTTTGGGCAGTGAATTCTCTGTTGCCAACAGCCTTCCAGTGACATTGCCAGCAGGCAGAGAACATAATTTGAAAACTGGTAGCAGACATGGAGACAATATTGGGATAGTCTCTGATAGCAGTCCTGACAAATTGAGCCATAGTGAACCATCAGATGGGGAGTTGTCTGATTGTAGGCTAAGTACTTGTGACACGTCAGAATGTAGTGGTTTGCCAGAACTAAATAGTACTGTGGTGGTGGGGAGGACCAATGAGAATGTTAATGCATCTGACTCCCTTGGTTTCGCACTTGTTTTGAAGAAGTTGATAGATCGAGGAAAAGTTGATGTTAAAGATGTAGCTTTGGAGATTGGCATTTCACCAGAGACATTAACAGCAAATATTAATGAGTCTTGCATGGCCCCTGATGTGCAACTCAAAATAGTCAATTGGCTTAAAGTTCATGTATACACTAATGCATTTCAGAAAAGTTTGAAAGTCCAATTCAAGCCAGCCAATTCATCCAAGGATGAAAACAGAGTCACTGCTGGTTCTGATACTATGCGGATAGCAGATCCAGATTTGCCAGATCCTGTTGCTGTTAAGTCAGTACCACCAAGAAGAAGAACCATCAGCAACATTAGGATTTTGAATGATAACAAAGGGCTATGTTCATCTGAGGTGGTCTCTAGTGAGAATGGGATGCCAATGGACAAGGTTAGAGTAGGTCAATCTGACCATGAAAATTCAGGAACTTCAAATGAAGCGTCCATTCCTGATGCAACTGAAATGAAATCAACCAAATCTGAGGATACTTTTCCCGAAGCTCAACAAGGGAATGTGGATAAGCCTTCCGAAAGCAACTTATCTGGATGTGTTTCAGAAGAGAAGTTTGCTAATGCATATATGTTCTCTGATAAGAACCATCCTTTTTATTCTGCTTCAGAACCACCTGCTTCTGGTTTCATGAATGTAGAAGCAAACGCTAGTTACATACACCCATACATCAGCAGAAAATTATTGCAGATTCATGAAGGAGTGCTTTCAGAGGATGAAATATGTCCAAGGAATGAAGGAAAATTTTCTTTGGATGAATCCTCGAAGCCTAGTGGTTGCTTTAGTGATAAAAATCAGAAACTTACTTGCAGTGACATTTGTAATCCTGATAAAGTGAATATGGAGCAATTGACTATGGCTAGAAATACCGGTTTATTAGATTTTTATCCAGAAGATGAATTAGAGGGGGAAATTATATATTTTCAGCATAGATTATTGCAGAATGCAGTTGCAAGAAAGAAGTGTGTTGATAATTTAATATATAATGTAGCTAAGAGTCTTCCACAGGAGATTGACGCAGTACATCAGCAAAGATGGGATGCTGTGCTTGTTAACCAGTATCTGTGTGATCTTAGGGAGGCTAAAAAGCAGGGCAGGAAAGAGAGAAGGCACAAGGAAGCACAGGCAGTCTTAGCTGCTGCAACTGCTGCAGCAGCTGCATCTACTAGGGTTTCTTCATTCCGGAAGGATGCCTTAGATGACTCTGTGCAGCAGGAGAATTTGTTGAAGTTGCACACTTTTAGTGGGAGGACTGGTGTCTGCTCTCAGCCAATGCCACGAGCCAAAGAGACAATTTCAAGAGTAGCTGTGGCAAGGACTTCATCAGAAAAATATTCGGATTTTGGTCTGCTGCCCACAGATTTTTCTAAGGAGCATCCTAGATCCTGTGATATCTGCAGACGATCTGAGAATATATTGAACCCTATTCTAGTGTGCTCTGGTTGCAAGGTTGCAGTTCACTTGGATTGCTATCGTAGTGTGAAGGAATTTATGGGTCCATGGTACTGTGAATTATGTGAAGATTTATCATCTAGGTTATCTGGGGCACCTGCTATCAATTTCTGGGAGAAGCCTTATTTTGTTGCAGAATGTGGAATATGTGGTGGTACTACTGGTGCTTATAGGAAGTCTTCAGATGGTCACTGGGTCCATGCCTTTTGTGCTGAGTGGGTTTTTGAGTCCACATTCAGAAGGGGACAAGTAAATGCCGTTGAAGGAATGGAAACTGTGTTGAAGGATGTTGATATTTGTTGCATCTGCCGCCGCAAACATGGTGTATGCTTAAAGTGTAGCTATGGACATTGTCAGACTACATTCCATCCATCCTGTGCTAGAAGTGCTGGATTGTACATGAATGTGAGGACTGCCTGTGGCAAGCTGCAGCACAGGGCTTACTGTGAAAAACATGGATTGGAGCAGAGGGCAAAGGCTGAAACTCAAAAACATGGAATCGAAGAGTTAAAAAGCATCAAGCAAATTAGGCGCTTGGTGATATTGGTTGCATATTTGAACATCAGAGTTAATTCAAGTGAAGAAATTGCAGAGGTTCTGCTCAATGAGGGAAGTGAAAGGTTTATGAGATTTAGAATTATGATTTTGCGAAGAGCAATAGTGGAGAAGGTTGAACTAGAGAGATTGCGTCTACTTTGTGAAAGAATTGTTAAACGTGAAAAAATAAAGCGGGAATTGGTTCTATGCTCACATGACATACTTGCCTTCAAAAGAGATCATGTTGCTAGGTCTGTCTTGGTTCATAGCCCTTTCTTCCTTCCCGATGGTAGTTCAGAATCAGCTACAACATCTCTTAAAGGGAATACAGAAGGATACAGATCATGCAGTGAAGCAATCCAAAGATCAGATGATGTAACTGTGGACAGCACGGTTTCTGCTAAGCATCGAGTAAGAGTTGCTGCAACCATGGACACTGACTCGAAGTTGGATGATGACTGTTCAACCTCACACAGCCATAATAATCTTAAGATTCCAGAGAGGGTGCAATTTTCTGGCAAGCAAATTCCTCATAGAGCTACTGTCATGTCACGTAATTTGGATGACAGCGGATGGAGAGCAAAATCAAGAAAGCATGCAGAGACATTTGGAAAAGAGCTTGTTATGACGTCAGATGAAGCATCTATGAAGAATTTAATGTTACCTAAAGGATATGCATATGTTCCTGCTGATTGTTTGTCAAATGACAAGCAATCTAACCAGGATGGGTTTACTGGTGAACCAGTGGAACATGATGGGGCTCTGGCCACTAATGTGGCAGGAAATTGCGCTCTGCTTTGGGGGGGAAAGTTTAGCATTGCTGTACATTCGTTGTGA 4479 0.4276 MMGRGAEGGCGTEERPCQVSRVPAKFPATQPGNFYDTILEIDHYSQVRKALSERSPFDVAEETSTSTVATLPSGLANFLNRHSDSRRRHKKSHAGADKKSSRACEKSRSSIFWVKTEEYFRDLRLSDIDTLLEVSLSISSAAWKCLSIPLLRNASRPNVVSKENDKGTVENVNSEVVKNEDGVMEINSVAAEVLPRDDKDHATSDSSSSLEWLLGCKNKISLTSERPSKKRKLLGGEAGLEKVLIASPCDGDSSFCHYCRRGDTSRESNQLIVCHICKVAVHKKCYGVQDAVDESWLCSWCKQKDFIGETVNPCVLCPKKGGLYRGFEEDGAGYECGRRQGNPEKTSDLKSYVRCFKSLVTYFCSCLLPLDFGYVCFLLAACNSFLLAGVTGTCRTSFHPLCARETRHRMEVWAKNGYDNVELRAFCSKHSDLQENNRILPSSGSVALGSEFSVANSLPVTLPAGREHNLKTGSRHGDNIGIVSDSSPDKLSHSEPSDGELSDCRLSTCDTSECSGLPELNSTVVVGRTNENVNASDSLGFALVLKKLIDRGKVDVKDVALEIGISPETLTANINESCMAPDVQLKIVNWLKVHVYTNAFQKSLKVQFKPANSSKDENRVTAGSDTMRIADPDLPDPVAVKSVPPRRRTISNIRILNDNKGLCSSEVVSSENGMPMDKVRVGQSDHENSGTSNEASIPDATEMKSTKSEDTFPEAQQGNVDKPSESNLSGCVSEEKFANAYMFSDKNHPFYSASEPPASGFMNVEANASYIHPYISRKLLQIHEGVLSEDEICPRNEGKFSLDESSKPSGCFSDKNQKLTCSDICNPDKVNMEQLTMARNTGLLDFYPEDELEGEIIYFQHRLLQNAVARKKCVDNLIYNVAKSLPQEIDAVHQQRWDAVLVNQYLCDLREAKKQGRKERRHKEAQAVLAAATAAAAASTRVSSFRKDALDDSVQQENLLKLHTFSGRTGVCSQPMPRAKETISRVAVARTSSEKYSDFGLLPTDFSKEHPRSCDICRRSENILNPILVCSGCKVAVHLDCYRSVKEFMGPWYCELCEDLSSRLSGAPAINFWEKPYFVAECGICGGTTGAYRKSSDGHWVHAFCAEWVFESTFRRGQVNAVEGMETVLKDVDICCICRRKHGVCLKCSYGHCQTTFHPSCARSAGLYMNVRTACGKLQHRAYCEKHGLEQRAKAETQKHGIEELKSIKQIRRLVILVAYLNIRVNSSEEIAEVLLNEGSERFMRFRIMILRRAIVEKVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVARSVLVHSPFFLPDGSSESATTSLKGNTEGYRSCSEAIQRSDDVTVDSTVSAKHRVRVAATMDTDSKLDDDCSTSHSHNNLKIPERVQFSGKQIPHRATVMSRNLDDSGWRAKSRKHAETFGKELVMTSDEASMKNLMLPKGYAYVPADCLSNDKQSNQDGFTGEPVEHDGALATNVAGNCALLWGGKFSIAVHSL 1492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1195 1492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 306 IPR013083 -
Glsi08g1195 1492 ProSiteProfiles Extended PHD (ePHD) domain profile. 1079 1188 IPR034732 -
Glsi08g1195 1492 MobiDBLite consensus disorder prediction 465 502 - -
Glsi08g1195 1492 CDD ePHD 1082 1187 - -
Glsi08g1195 1492 ProSiteProfiles Zinc finger PHD-type profile. 253 304 IPR019787 -
Glsi08g1195 1492 ProSitePatterns Zinc finger PHD-type signature. 256 301 IPR019786 -
Glsi08g1195 1492 MobiDBLite consensus disorder prediction 611 642 - -
Glsi08g1195 1492 Pfam PHD-finger 1025 1058 - -
Glsi08g1195 1492 Pfam PHD-finger 269 302 - -
Glsi08g1195 1492 PANTHER PHD FINGER PROTEINS 67 322 - -
Glsi08g1195 1492 SMART PHD_3 1134 1188 IPR001965 -
Glsi08g1195 1492 SMART PHD_3 363 431 IPR001965 -
Glsi08g1195 1492 SMART PHD_3 1013 1058 IPR001965 -
Glsi08g1195 1492 SMART PHD_3 255 302 IPR001965 -
Glsi08g1195 1492 SUPERFAMILY FYVE/PHD zinc finger 245 320 IPR011011 -
Glsi08g1195 1492 ProSitePatterns Zinc finger PHD-type signature. 1014 1057 IPR019786 -
Glsi08g1195 1492 Pfam PHD-zinc-finger like domain 1081 1187 - -
Glsi08g1195 1492 MobiDBLite consensus disorder prediction 710 728 - -
Glsi08g1195 1492 MobiDBLite consensus disorder prediction 666 728 - -
Glsi08g1195 1492 MobiDBLite consensus disorder prediction 79 102 - -
Glsi08g1195 1492 MobiDBLite consensus disorder prediction 685 702 - -
Glsi08g1195 1492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1001 1065 IPR013083 -
Glsi08g1195 1492 ProSiteProfiles Zinc finger PHD-type profile. 1011 1060 IPR019787 -
Glsi08g1195 1492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1079 1189 IPR013083 -
Glsi08g1195 1492 SUPERFAMILY FYVE/PHD zinc finger 1009 1059 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1195 Glsi-ChrGlsi08 8702958 8719558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1195 1014 1172 C2H2 Transcription Factor Family AT3G14740 30.178 2.41e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi08g1195 zf-HC5HC2H_2 4.2e-21 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1195 08 8702958 8719558 Glsi08g1195 08 8702958 8719558 ECH