Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1179 ATGAGCAAACCCAGAACCCATAAAAAATCCAGCAAGCATGTCAACCAAAACCAGAATCAACAGCCCCAGAAAACAGAGAAACAACCCTCCTGGGCAGCGGTAAGAGGCCTACTGACTTGTAGAAATGTCCAAACCCAACAGCAGCAGAAGCAGAAGCAGCCGCAGCCAGAAGTAAAGCAACCAAAGCAAAAACAAGAACAGAGAAAGCTACAAGAAGAAGATCGAGTCCTCGAAGAAAGCAGCAAGAAATGCAAGAAAATGAAATGTTCTGGTTCAATTTGCAATAACACCAAGGTCATGGTAAAGCCTGAAACAGGATCCCCTGATCTCCACAAGAAAAGGGTATCAACGGGTGCGAGTAACAGCAATGCTACTTCTAACAGATCCGTGAAACATCCTCTGCATGAACTCAATGGGGTTGTGTCTGCCTCCTCTTCTTCTTTGTCAGTATCTTCTAATTCTTCTGTTAGTGGGTCTTTTAGGGGAATGCCATTCAGGAGGCTCTCCGGTTGTTACGAGTGTCGAATGGTGGTTGACCCCCTTCTGGGTTTCACCAGAGACCCTTCTCTTAGGGCTAGCATTTGTCCTTGCCCTGACTGTGGTGAGATCTTCATGAAAGCTGAAAATTTGGAGCTTCATCAGGCTGTTAAACATGCAGTATCTGAACTGGGTCCGGAAGATACAAGCAAGAACATAGTCGAAATTATATTCCACTCAAGCTGGCTAAAGAAACAATCCCCAGTGTGCAAAATCGACCGCATCCTTAAGGTCCACAACACCCAGAAGACGGTTTGCAAATTCGAGGAGTACAGAGACTCCATCAAAGCGAAAGCCACAAAGCTTTCCAAGAAGCACCCACGTTGCATAGCAGATGGCAACGAGCTACTCAGGTTCCATTGCACCACCTCTGTGTGCTCGCTAGGCCTAAACGGATCCTCCAACCTCTGCAACTCAATTCCACAATGCAATGTCTGTAGCATAATCAAGAATGGGTTCAAGGTCACTGGAGAATGTAACGGAGGAAATACCGGAAAGGGGATATTAACGACGGCAACAAGCGGGAAGGCCCACGACAAAGCCGGAGTTTCAGCCGATGACAAGAACGACAAGAGGGCAATGCTGGTTTGCCGGGTGATAGCAGGAAGAGTGAAGAAGAACATGGAAGGTAGTATGGAGGAGTATGATTCGGTTGCAGGGGCCGTTGGGGCTTATTCCAATTTGGAAGAGTTGTATGTGTTCAACCCCAGAGCTATATTGCCTTGCTTTGTTGTGTTCTATTCTGGTTTTTTATCTGCTGTTCTCATAGCAAGACAAAAGAGTGGGCAAAAAGAATTTTGGCGTGGAAATTTTGCGTGGGACCCACCTACCCATGTTCCTGGTGTTTGTGCTGTGCTGATGACGGGTCAGGGTCAGGGCCAGGGTCAGGGCTTAATTGCTAGGACCACTTTACGTCTTCCTAGAACAGTTAAGCTTGAAGGAATCAAAAGGATGGTAAGCATAGCTCAAGAGAGAGGTTGTTTTGCAACCCAGCAAGTCTCTAGGATTTGTGGGGATGGCGAAATAGAACCATTTTTGAAGAAGGGTTTACAAGGCAGACAAACCCAGGACATGAAAATTGATGATGCATGGGCTAAGAATTATGTTTTCTCGGGCTTGAAGGGGATTCAAGGGCCCTAG 1677 0.4663 MSKPRTHKKSSKHVNQNQNQQPQKTEKQPSWAAVRGLLTCRNVQTQQQQKQKQPQPEVKQPKQKQEQRKLQEEDRVLEESSKKCKKMKCSGSICNNTKVMVKPETGSPDLHKKRVSTGASNSNATSNRSVKHPLHELNGVVSASSSSLSVSSNSSVSGSFRGMPFRRLSGCYECRMVVDPLLGFTRDPSLRASICPCPDCGEIFMKAENLELHQAVKHAVSELGPEDTSKNIVEIIFHSSWLKKQSPVCKIDRILKVHNTQKTVCKFEEYRDSIKAKATKLSKKHPRCIADGNELLRFHCTTSVCSLGLNGSSNLCNSIPQCNVCSIIKNGFKVTGECNGGNTGKGILTTATSGKAHDKAGVSADDKNDKRAMLVCRVIAGRVKKNMEGSMEEYDSVAGAVGAYSNLEELYVFNPRAILPCFVVFYSGFLSAVLIARQKSGQKEFWRGNFAWDPPTHVPGVCAVLMTGQGQGQGQGLIARTTLRLPRTVKLEGIKRMVSIAQERGCFATQQVSRICGDGEIEPFLKKGLQGRQTQDMKIDDAWAKNYVFSGLKGIQGP 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1179 558 ProSitePatterns Zinc finger C2H2 type domain signature. 195 218 IPR013087 -
Glsi08g1179 558 Gene3D - 219 427 - -
Glsi08g1179 558 ProSiteProfiles Zinc finger C2H2 type domain profile. 195 223 IPR013087 -
Glsi08g1179 558 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 84 426 - -
Glsi08g1179 558 MobiDBLite consensus disorder prediction 100 132 - -
Glsi08g1179 558 MobiDBLite consensus disorder prediction 39 56 - -
Glsi08g1179 558 Coils Coil 63 83 - -
Glsi08g1179 558 MobiDBLite consensus disorder prediction 13 28 - -
Glsi08g1179 558 MobiDBLite consensus disorder prediction 57 82 - -
Glsi08g1179 558 MobiDBLite consensus disorder prediction 1 82 - -
Glsi08g1179 558 SUPERFAMILY ADP-ribosylation 220 434 - -
Glsi08g1179 558 MobiDBLite consensus disorder prediction 114 132 - -
Glsi08g1179 558 FunFam C2H2-like zinc finger protein 219 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1179 Glsi-ChrGlsi08 8586917 8590860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1179 160 426 C2H2 Transcription Factor Family AT1G75710 54.795 8.25e-101 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi08g1179 None None None