Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1162 ATGACCAACTTAGTCAGCTCAGCTATGGCCATGCCCATGGACATGGATACTATCCCTGAGCTTGACTTCTCCGGCTACAGTACCACCACAGCCACCACACCTGCCTCTGACGACGACCACCCCGGTTGTAACTGGAACCACTGGTCTCCCCTTGTCAACTGGGACGCCTTCACCGGTGCCCAAGATGACTTCGACGACCTCATCGATTCCATGATGGAGGGCGCTGAGGGGCTTCTTAGCCCCCATCACGGCATGGAAGAAGAGTTAGAAGGGTACAACTCTGCTTCCACCATGGTGGATGAAGAAGCAAACGTTGTGGAAAATTTCAAGGGTCTCAGGCTGGTGCACCTTTTGATGGCCGCCGCGGAGGCTCTCACCGGCGTTAACAAGAGCCGCGATCTGGCTCGAGTGATATTGATTCGGCTCAAGGAGTTAGTTTCCCCCACGGAGGGTTCCAACATGGAGAGGTTGGCGGCGTATTTCACAGAAGCTTTGCAGGGTTTGGTAGAAGGCGCGGTGGGTGCTCACAATAGCAATAATAGCAACAAGCATTTAATCAGCAATGAACATCATCCGACGGACATGCTGGCTGCGTTCCAGCTGCTTCAGGACATGTCCCCGTATGTCAAATTTGGGCATTTCACTGCCAATCAGGCCATATTGGAGGCCGTGGCCCAAGATAGGCGGGTCCACATCGTAGACTACGACATCATGGAAGGGATTCAATGGGCGTCCTTGATGCAGGCCCTCGCCTCCAGAAAGGATGGCCCACACCTCAAGATCACCGCATTGTCCAGGGTTGGAACTGGAAACGGAAGAAGATCCATCGCCACAGTCCAAGAGACCGGGCGTCGATTGACGGCGTTTGCGGCTTCCATCGGTCAACCCTTTTCCTTTCACCAATGCAGGTTGGACTCGGAGGAAATGTTCCGACCTTCCGCTCTGAAGCTGGTTCGAGGAGAGGCCTTGGTGTTCAACTGCATGCTGCACCTCCCCCACCTCAGCTACCGGGCGCCCGATTCGGTAGCAACGTTCCTAAGCGGAGCGAAGACGTTGAACCCGAGACTAGTGACACTGGTGGAAGAGGAGATGGGGCCGGTTGGGGAAGTGGGGTTCGTGGGGCGATTCATGGACTCGTTGCACCATTATTCGGCGGTTTACGATTCGATGGAGGCTGGGTTCCCGATGCAGATACGAGCGAAGGCATTGGTGGAGCGGGTGTTTCTGGGGCCGAGAATAGCGAGTTCGTTGAGGAGGATATACAGAACGGGAGGGAAAGAGGAGAGAGGGTGGTGGGGGGAGTGGATGAGTGAGGTGGGGTACAAGGGAGTTGAGGTAAGCTTCGCGAATCATTGTCAAGCGAAATTGTTATTGGGACTATTCAATGATGGGTATAGGGTGGAGGAGTTGGGTAGCAATAAGTTGGTGTTGAGTTGGAAATCTAGGCGTTTGCTTTCCGCCTCTCTCTGGTCACCTTCTTCCCACCCTACAACTCAACTCTAA 1503 0.5436 MTNLVSSAMAMPMDMDTIPELDFSGYSTTTATTPASDDDHPGCNWNHWSPLVNWDAFTGAQDDFDDLIDSMMEGAEGLLSPHHGMEEELEGYNSASTMVDEEANVVENFKGLRLVHLLMAAAEALTGVNKSRDLARVILIRLKELVSPTEGSNMERLAAYFTEALQGLVEGAVGAHNSNNSNKHLISNEHHPTDMLAAFQLLQDMSPYVKFGHFTANQAILEAVAQDRRVHIVDYDIMEGIQWASLMQALASRKDGPHLKITALSRVGTGNGRRSIATVQETGRRLTAFAASIGQPFSFHQCRLDSEEMFRPSALKLVRGEALVFNCMLHLPHLSYRAPDSVATFLSGAKTLNPRLVTLVEEEMGPVGEVGFVGRFMDSLHHYSAVYDSMEAGFPMQIRAKALVERVFLGPRIASSLRRIYRTGGKEERGWWGEWMSEVGYKGVEVSFANHCQAKLLLGLFNDGYRVEELGSNKLVLSWKSRRLLSASLWSPSSHPTTQL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1162 500 ProSiteProfiles GRAS family profile. 105 491 IPR005202 -
Glsi08g1162 500 Pfam GRAS domain family 114 490 IPR005202 -
Glsi08g1162 500 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 93 487 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1162 Glsi-ChrGlsi08 8495212 8496714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1162 121 494 GRAS Transcription Factor Family AT3G54220 36.082 1.17e-55 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Glsi08g1162 GRAS 1.3e-98 CL0063