Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1159 ATGTCTTTGAGCCCGCCTCGTGTGAGGACGAATGGCCAACCCACGACCAACCAGTTCTATTGGTGCTACCAGTGTAATCGGATGGTCAGGATCGCCTCCACAGAGCCGTCCGACATTATCTGCCCTCGCTGTTTTGGGCAATTCCTCTGTGAAATAAACATATCAAGGCCAAGACTACTTGTAGATTTCACCGACCACGATCCTTCACCAGAAGCACGTTTGCTCGAAGCGCTTTCCCTGATTCTTGACCCACCAATCAGGCGGTTTGATGGCCGTCTCAATGGCCCGGAAGCCGAACCTCGACGCTTTCGTTGGATTCAGCAGCCACATCGGGAACAAGAAGGCAGACATCATGGGGACTCAGATGCCGAAATTCCCGTCCGTCACATAACGCGTCGACGACATCGTGGTTCTGATAACAGAGCTCTTGATTCCGACCCAGAACCTGGAATTCAACCTCGTCCTCGGACTTGGATAATTCTTCGGCCTCTCGATCCTTCTAGCTCATTTGAATCGATTCCACGACGTGAAAATCCGACACCACGTGGAGTTAACCCAGGAGACTACTTTTTGGGGCCGGGTCTGAGAGAACTGATCGACCAACTGACGGAAAATGACCGGCAAGGTCCACCGCCGGCGCCGGATAGAGTTATCGATGCCATTCCCACTGTGGAAATCTCGGAGACCCATCTGAAGGAGAACTCTCACTGCCCGGTTTGCCAGGAAGAGTTTGAAGTGGGTGGACAAGCAAGGGAGTTGCCCTGCAAGCATATATATCATTCAGATTGCATTGTTCCTTGGCTGAGGCTTCACAATTCCTGCCCTGTTTGCCGGGTTGAGGTGCCTGTGTCTTCTGACTCCGTTGAACCTAGTGACGAAGAAGGAGGCAGTTTGCGAAGGTGCTTGAGGTGGAGTCAAAGTCAATTTGCCTCGTTGTGGCCCTTCCATGGAAGGCATCGGCGGATTCATCCGGAAGGACAGAATCTTACTGCTTCTATAAGGGGTGATAATTGA 1014 0.5197 MSLSPPRVRTNGQPTTNQFYWCYQCNRMVRIASTEPSDIICPRCFGQFLCEINISRPRLLVDFTDHDPSPEARLLEALSLILDPPIRRFDGRLNGPEAEPRRFRWIQQPHREQEGRHHGDSDAEIPVRHITRRRHRGSDNRALDSDPEPGIQPRPRTWIILRPLDPSSSFESIPRRENPTPRGVNPGDYFLGPGLRELIDQLTENDRQGPPPAPDRVIDAIPTVEISETHLKENSHCPVCQEEFEVGGQARELPCKHIYHSDCIVPWLRLHNSCPVCRVEVPVSSDSVEPSDEEGGSLRRCLRWSQSQFASLWPFHGRHRRIHPEGQNLTASIRGDN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1159 337 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 137 282 - -
Glsi08g1159 337 SUPERFAMILY RING/U-box 217 284 - -
Glsi08g1159 337 Pfam Ring finger domain 236 278 IPR001841 -
Glsi08g1159 337 ProSiteProfiles Zinc finger RING-type profile. 237 278 IPR001841 -
Glsi08g1159 337 MobiDBLite consensus disorder prediction 91 159 - -
Glsi08g1159 337 CDD RING-H2_RNF126-like 237 278 - -
Glsi08g1159 337 Pfam zinc-ribbon 18 52 IPR039525 GO:0061630
Glsi08g1159 337 MobiDBLite consensus disorder prediction 169 188 - -
Glsi08g1159 337 FunFam E3 ubiquitin-protein ligase RING1-like 201 284 - -
Glsi08g1159 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 284 IPR013083 -
Glsi08g1159 337 MobiDBLite consensus disorder prediction 91 129 - -
Glsi08g1159 337 SMART ring_2 237 277 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1159 Glsi-ChrGlsi08 8476127 8477140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1159 209 315 C3H Transcription Factor Family AT1G68180 45.045 2.60e-25 100