Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1158 ATGGTCAAGAGAGAGAACAAAATCCACACAGAGCCATCAAAGGCAGTGCAATCTCTATCTTCATCATCAGGATCGGATGGCAAAAAGAAGTACAAGGGAGTCAGAATGAGAAGCTGGGGATCATGGGTATCAGAGATTAGAGCACCAAACCAGAAAACAAGAATATGGTTAGGGTCTTATTCAACTCCAGAGGCAGCAGCCAGAGCCTATGATGCTGCACTTCTATGCCTTAAAGGCTCCTCAGCCAATCTCAATTTCCCATTAACTTCTTCACACTACATTCCTCAAGATACTGTCATGTCCCCTAAATCAATCCAAAGAGTAGCTGCAGCAGCTGCCAATAGTTTCGTTGATAATGCCAGCACCCCACCTTCCCCTCCTCCGTCCTCAACATCCTCATCGTCAGTGTCGTCCCCATCAATGTCCTCCTCTCCCTCAGATCAAATCGATGATGATATCTCGCTAATGTCATCTTTTGGAGCCTACACTAGCTGTGATCAGCCAAATGAACCAGTCTCTTTGATGGACTCTTGGTACAACTTTGATGGTTTACAATCCCCAAAATACGTTGATCAAATGCTAAGTGGTGCTTTCTTTGATATTGATTCAACCCAGCTGCTCGATGATTTATACGAAGAAAGTGACATTCGTTTTATTCTTGCTCCTATGAGGATTGTGGGAAGGCCTTTATTGCACTGGACGATGTCAGAGATGGTTGTGTCAAATTCACTGAGAAGAGGGAACCATGTAGAGTGTGGAAACTTGAAAGGCGTTGGAAAGTGCCCTAGTCCTTCCATGGTGGCATTGGAAGTGTGCAGAAGAAAGGGTTCTGCTTTTGGTATTATACGTTCAAAGATATGCAGGAAGAAGGGCAGAGGATCTCCCCCTTCCTTTGACTATACCCTGAATATATACCGTGTGTTTCGGAGCTCCGATTTCTCGCCATCGCGGAGCCTTGGCATTCCCGCAGTGCTGCTATCGGTCCATGATTTCTTCTTCAGAGTCTTGAGCTGCAAACGCCTATCCCATTCTGCCGATTTTGGGGTTCTGCACAAACTCATGGGTTATTCAAAGGAACAGCTTCTTGCTCGACTGCAGGAGCTTCAGATTGAATTTTCCCAATATGAACATCCAGTTGTTTTAACAGTTGAGGCTCAGGCGAAGTATGTTGGAAATTTGGGAGGTGGAATGAGTAAAAACTTATTTTTGAAGGACAAGAAACACAGGTTTTATGTTGTTTCTGCTCTGGCAGATACGAGGGTAGATCTGAAAGTGTTATCTCAGCGACTTGGTTTGGGAAAAGGAGGTCTGAGAATGGCACCTGAAGAGGCTTTAGGTGAAATACTTCAGGTGCCCTTGGGTTGCGTTACTCCATTTGCGCTAGTGAATGAATCAGCACGAGATGTTTCGTTGTTATTGGATCAAAGGTTCAAGACGCAGGAGCATTGCTTCTTCCATCCACTGTCAAATGACATGTCCATATCTCTAAATGCTCCAAGTCTTGACAAATTTCTTAAATCAATTGGAAGAGATCCCTCATATGTTGATTTGGAGGCTAACCTTACAGTGGGTAAAGATCAGCCCCCTGATCTAGCTGCACTAGTTCCATCAGATTCAATAGTCTTGCCAGATGAACCAGAGAAGCAACCCTCTTCACAAGTTCCAATAGACAGAGGTCATGTTTCAGCAGATAATAAGTCCAAGGAGGGTTCAGCAAAAAGTGTCAAGCCATCCACTAGTGAGAAAAACACAAAGGGGAAACCAGTAAAAAATGTTCATTCATCAAGCTCCTTTGCTGATGTTGGGCAATTTGTAGAAGAAATATTGCATAGAACATCAGAATTGTTGCTTTCAGAGATCAAGGAAGAAACTATTAAGCAACATCAAGAGCAGCTGGGTACTGTGGTGTCAAACAATCTATGTAAGGGTCTGAGCTCAGATTTGAAGAACCTTGCTATAATATTTAAGAATACGGCATACACAGAAGGATTCCATGCTGGTATTCACCAACAGCCCAAACGCATGTGA 2028 0.4369 MVKRENKIHTEPSKAVQSLSSSSGSDGKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSANLNFPLTSSHYIPQDTVMSPKSIQRVAAAAANSFVDNASTPPSPPPSSTSSSSVSSPSMSSSPSDQIDDDISLMSSFGAYTSCDQPNEPVSLMDSWYNFDGLQSPKYVDQMLSGAFFDIDSTQLLDDLYEESDIRFILAPMRIVGRPLLHWTMSEMVVSNSLRRGNHVECGNLKGVGKCPSPSMVALEVCRRKGSAFGIIRSKICRKKGRGSPPSFDYTLNIYRVFRSSDFSPSRSLGIPAVLLSVHDFFFRVLSCKRLSHSADFGVLHKLMGYSKEQLLARLQELQIEFSQYEHPVVLTVEAQAKYVGNLGGGMSKNLFLKDKKHRFYVVSALADTRVDLKVLSQRLGLGKGGLRMAPEEALGEILQVPLGCVTPFALVNESARDVSLLLDQRFKTQEHCFFHPLSNDMSISLNAPSLDKFLKSIGRDPSYVDLEANLTVGKDQPPDLAALVPSDSIVLPDEPEKQPSSQVPIDRGHVSADNKSKEGSAKSVKPSTSEKNTKGKPVKNVHSSSSFADVGQFVEEILHRTSELLLSEIKEETIKQHQEQLGTVVSNNLCKGLSSDLKNLAIIFKNTAYTEGFHAGIHQQPKRM 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1158 675 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Glsi08g1158 675 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Glsi08g1158 675 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Glsi08g1158 675 CDD PrdX_deacylase 358 515 - -
Glsi08g1158 675 MobiDBLite consensus disorder prediction 1 32 - -
Glsi08g1158 675 FunFam Putative prolyl-tRNA synthetase 353 522 - -
Glsi08g1158 675 CDD AP2 29 87 IPR001471 GO:0003700|GO:0006355
Glsi08g1158 675 FunFam ethylene-responsive transcription factor ERF014-like 29 89 - -
Glsi08g1158 675 Gene3D - 350 524 IPR036754 GO:0002161
Glsi08g1158 675 MobiDBLite consensus disorder prediction 572 594 - -
Glsi08g1158 675 MobiDBLite consensus disorder prediction 12 27 - -
Glsi08g1158 675 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Glsi08g1158 675 Pfam Aminoacyl-tRNA editing domain 377 504 IPR007214 GO:0002161
Glsi08g1158 675 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Glsi08g1158 675 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Glsi08g1158 675 MobiDBLite consensus disorder prediction 117 147 - -
Glsi08g1158 675 SUPERFAMILY YbaK/ProRS associated domain 356 517 IPR036754 GO:0002161
Glsi08g1158 675 PANTHER YBAK DOMAIN-CONTAINING PROTEIN 354 674 IPR040285 -
Glsi08g1158 675 MobiDBLite consensus disorder prediction 541 594 - -
Glsi08g1158 675 Gene3D AP2/ERF domain 29 89 IPR036955 GO:0003700|GO:0006355
Glsi08g1158 675 MobiDBLite consensus disorder prediction 131 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1158 Glsi-ChrGlsi08 8467428 8475099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1158 31 216 AP2-EREBP Transcription Factor Family AT1G21910 52.217 4.60e-44 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi08g1158 tRNA_edit 5.2e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1158 08 8467428 8475099 Glsi08g1158 08 8467428 8475099 ECH