Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1113 ATGTTGATGATTAAGACGATCCAATGGTGCATGTTGGACTTATTGGCATGTGTACAGCCTGTAGATAAGGACATGCTGCAATGTGAGGGAAGGTCAATTTGGACCTTTAAAATTCGTGGTAGATGTTCCATATATAATCATCATCATCTTTGCAACTTCGGTGGAGGATGTGATCTTGGAGGTAGTTACAAGGAGGGAGTTCTTCGGCATTTGCATTTTGGCGAGTGTGCACCTTCTGCATCGAATTCGGGACGAGAAGCGGAACCTCCCTGGCAAAAAGTTAATGATGCTGCCACTCTCAGCATCCTGTGCAAAGATGAAGACATGAGGTTAAAAGTACTTCTTGGTGGTTGTATTCCAACATTACTATCGCTTTTAAAGTCTGAACCCACAAAGGTCAGGAAGGCAGCAGCTGAAGCGATATATGAAGTTTCCTCTGGTGGTCTTTCAGATGATCATATTGGTCTGAAAATTTTTGTTACAGAAGGTGTAGTTCCTACCTTATGGGGTCAATTAAATCCAAGGAATGAGCAAGAGAGAGTTGTGGAGGGTTTTATTACCGGAGCATTAAGAAAACTATGTGGTGACAAAGATGGCTACTGGAAAGCGACATTAGAAGTTGGAGACGTGGATATTATCCTTGTTGGTGAGGAAAATGATATATCCGTACGTGCAAGTGCTGCTGATGCACTAGAGGCCATTTATTCAAAGTCAACGAGGGCTAAGAAAGCTATTATTAGTGCAGATGGTGTTCCAATCCTTATTGGAGCTATAAATGCTCCTTCTAAAGAGTGTATGCAAGGCAATGGTGGCCAGGCTCTGCAGGAGCATGCAACTCGACCTTTGGCAAATATATGCGGCAGCATGTCTGCTTTAATACTATATCTTGGAGAACTTTCTCATTCTCCTCGCCTTGCTGCACCGGTTAGTGATATAATTGGTGTTCTTACTTATACACTCATGGTCTTTGAGGAAAAAATTGATGCTGATGAGGAACCTCTCAATGCAACTCAAGTAGAGGATATTCTAGTAACACTATTGAAGCCTCGAGACAAGAAGCTGATTCAAGAGCGTGTCCTAGAGGCTATGGCGAGTCTATACAGAAACATCTGAACATGGGAGGCTACGAACAAAAGAGAAGGTATCCAGTTACCTATATCATTGCTGGGACTATCCAGTGAGCAGCACCAAGAGTACTCAGTTCAGTTGCTAGCAATCTTAACTGACCAGGTAGATGACAGCAAGGGGGCAATTACTGCTGCTGGAGGGATTCCTCCATTGGTGCATTTGCTGGAGACAGGATCGCAGAAGGCAAGAGAGGAAGCAGCTCATGTTCTGTGGAATTTATGCTGTCACAGTGAAGATATTCGTGCATGCGTTGAAAGTGAAGGGGCCATCCCAGCATTCTTGTGGCTTTTCAATCTTGCAGCTGATGAGATTGTGCTTACCTGCATGAAGCTTTTGACCAGAAAAACTCAAGTTGTTGCAACCCAGTCAGCTAGAGCATTGAGTGTTCTGTCTTGTTCAACCAAGAGCAAATATACAAATAAGATGCCTTATATTACAGAGGGGCATGTCAAGCCACTAATAAAATTGGCTAAAACTTACTCTGTTAATGCTGTTGAAACTGCCATTGCTGCACTAGATAATCTTCTCTTTGATCCCCTTATTGCTACTGAAGCTTTAGCAGAAGATGTGGTTTCTGCTTTAACTAGAGTTCTGATAGAAGGAACTTTTGAAGGTAAACAAAATGCATCACGTGCACTTCATCAGTTACTGAAGCATTTTCCAGTAGCTGATATTCTCAAGGGGAAAGCTCAGTGCCTTTTCACTATGCTTGCGCTTATTGGTTCCTTAAGTGCAACGGATATGGATAGAACTGATCCTGCAGATGCTTTAGAAGTGATTGCGCTGCTAGCCAGAGCAAAACAGGGTGTCAAGTACACTTACTCTCCATGGTCTGCACTTGCTGAAACGACATCAAGCTTGGATCCTCTTGTTTTCTGCCTGGCTGAGGGGCCTCCTCTAGTCCAAAACAAGGTAATTGAAATTCTGTCTAGACTTTGTGGAGATCAACAAACCGTGGTTGGTGAGTTGTTGGCTGCTAGGTCCAGATCCATTGGTTCATTAGACTGTTCAACAGGAATTGAAGTCCAAACTCCTAGAGGTTTTATGGAGAATAATGCATTTCAAGAAGTTGAATTTGATATTCCTGATCCAGCCACAGTTTTGGGTGGTACTCTTGCCTTGTGGTTACTCTCAATTACTGCTTCTTTCCATATGAAGAACAGACTCACAATTATGGATGCTGGTAGACTTGAGGCTCTCTCTGAGAAGCTTAGTCAGATATGCCAAACCTTGTTGCTTTATCGAAAGTTTTCTTTGCTGCGAAATCCTGAGCAAGTTGTTTTGAATCACCTTTTTGAAGTTGAAGATGTAAGAGTGGGATCTACTGCACGGAAATCGATACCCCTTTTAGTGGATCTCATGAGACCAATACCAGAAAGGCCTAGTGCTCCACCAGTTGCTGTTGGACTCTTAACAAGCACTGCAGATGGAAATGATACAAATAAATTAATCATGGCTGAAGCTGGAGCTCTGGAAGCTTTAAATAAATACCTGTCTTTGAGCTCTCAAGATTCAATGGAGGCCACTATTTCTGAGTTACTAAGAATATTATTTTGCATTATCAAACATGAAGCATCAACAAGCTCCTTGAACCAGCTTATAGCGGTTTTACGTCTTGGATTAAGAAAGGCTAGATATAGTGCAGCTAGAGCCCTTCGTGAACTTTTTGATGCTGAGAGCATTAGAGACTCAGATTGA 2826 0.4246 MLMIKTIQWCMLDLLACVQPVDKDMLQCEGRSIWTFKIRGRCSIYNHHHLCNFGGGCDLGGSYKEGVLRHLHFGECAPSASNSGREAEPPWQKVNDAATLSILCKDEDMRLKVLLGGCIPTLLSLLKSEPTKVRKAAAEAIYEVSSGGLSDDHIGLKIFVTEGVVPTLWGQLNPRNEQERVVEGFITGALRKLCGDKDGYWKATLEVGDVDIILVGEENDISVRASAADALEAIYSKSTRAKKAIISADGVPILIGAINAPSKECMQGNGGQALQEHATRPLANICGSMSALILYLGELSHSPRLAAPVSDIIGVLTYTLMVFEEKIDADEEPLNATQVEDILVTLLKPRDKKLIQERVLEAMASLYRNIXTWEATNKREGIQLPISLLGLSSEQHQEYSVQLLAILTDQVDDSKGAITAAGGIPPLVHLLETGSQKAREEAAHVLWNLCCHSEDIRACVESEGAIPAFLWLFNLAADEIVLTCMKLLTRKTQVVATQSARALSVLSCSTKSKYTNKMPYITEGHVKPLIKLAKTYSVNAVETAIAALDNLLFDPLIATEALAEDVVSALTRVLIEGTFEGKQNASRALHQLLKHFPVADILKGKAQCLFTMLALIGSLSATDMDRTDPADALEVIALLARAKQGVKYTYSPWSALAETTSSLDPLVFCLAEGPPLVQNKVIEILSRLCGDQQTVVGELLAARSRSIGSLDCSTGIEVQTPRGFMENNAFQEVEFDIPDPATVLGGTLALWLLSITASFHMKNRLTIMDAGRLEALSEKLSQICQTLLLYRKFSLLRNPEQVVLNHLFEVEDVRVGSTARKSIPLLVDLMRPIPERPSAPPVAVGLLTSTADGNDTNKLIMAEAGALEALNKYLSLSSQDSMEATISELLRILFCIIKHEASTSSLNQLIAVLRLGLRKARYSAARALRELFDAESIRDSD 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1113 941 Gene3D - 514 706 IPR011989 -
Glsi08g1113 941 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 714 784 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Glsi08g1113 941 Gene3D - 82 214 IPR011989 -
Glsi08g1113 941 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 422 464 IPR000225 GO:0005515
Glsi08g1113 941 SUPERFAMILY ARM repeat 93 476 IPR016024 -
Glsi08g1113 941 SUPERFAMILY ARM repeat 479 933 IPR016024 -
Glsi08g1113 941 Gene3D - 215 513 IPR011989 -
Glsi08g1113 941 Gene3D - 738 940 IPR011989 -
Glsi08g1113 941 SMART arm_5 453 508 IPR000225 GO:0005515
Glsi08g1113 941 SMART arm_5 411 451 IPR000225 GO:0005515
Glsi08g1113 941 SMART arm_5 554 594 IPR000225 GO:0005515
Glsi08g1113 941 SMART arm_5 854 894 IPR000225 GO:0005515
Glsi08g1113 941 SMART arm_5 513 553 IPR000225 GO:0005515
Glsi08g1113 941 SMART arm_5 106 146 IPR000225 GO:0005515
Glsi08g1113 941 SMART arm_5 238 287 IPR000225 GO:0005515
Glsi08g1113 941 Pfam Armadillo/beta-catenin-like repeat 415 450 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1113 Glsi-ChrGlsi08 8188210 8196451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1113 382 592 U-box Gene Family AT2G23140 31.280 1.41e-08 56.6