Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1112 ATGGCAGCAGAGCTACAATTGCCACCGGGCTTCAGATTCCATCCAACGGATGAGGAGCTAGTGATGCAATATCTCTGCCGTAAATGTGCATCGCAGTCTATCGCCGTTCCGATCATCGCCGAAATTGACCTTTACAAGTACGATCCGTGGGACCTTCCCGGCATGGCCTGGTATGGAGAGAAGGAGTGGTACTTCTTTTCACCGAGGGACCGAAAATATCCGAACGGTTCCAGGCCGAACCGTGCGGCGGGGACCGGGTACTGGAAGGCAACCGGAGCGGATAAGCCCATTGGACATCCGAAACCCGTTGGGATCAAGAAAGCTCTGGTTTTTTACGCGGGGAAAGCGCCTAAAGGGGACAAAACCAATTGGATCATGCACGAGTATCGTCTCGCCGATGTGGATCGCTCCGCTCGCAAAAAGAACACCTTGAGGCTGGATGACTGGGTGCTTTGCCGAATATACAACAAGAAGGGCACTATTGAAAAGCAACCAAGCCGCAAAACTGAATGCTCGGAAATCGAGGACAAGAAGCCGGAGAATCTGACTCTTGGTGGTGCGTTTCCACCACCCCCTCCGCCGGCGGCGATGACTGATTACATGTATTTTGACGCGTCGGATTCAATCCCAAAGCTGCACACCGACTCGAGCTGCTCGGAGCACGTAGTGTCGCCGGAGTTCGCGAGCGAGGTGCAGAGCGAACCCAAGTGGAATGGGTGGGAGAAGAACCTTGAGTTTCCATATAATTACATGGATGCCACAATTAACAATGGCTTCGGGTCGCAGTTGATTCAGAGCAATAATCAGATGTCGCCATTGCAGGACATATTCATGTACCTGCAGAAGCCCTTCTGA 855 0.5263 MAAELQLPPGFRFHPTDEELVMQYLCRKCASQSIAVPIIAEIDLYKYDPWDLPGMAWYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGHPKPVGIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRSARKKNTLRLDDWVLCRIYNKKGTIEKQPSRKTECSEIEDKKPENLTLGGAFPPPPPPAAMTDYMYFDASDSIPKLHTDSSCSEHVVSPEFASEVQSEPKWNGWEKNLEFPYNYMDATINNGFGSQLIQSNNQMSPLQDIFMYLQKPF 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1112 284 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Glsi08g1112 284 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Glsi08g1112 284 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Glsi08g1112 284 FunFam NAC transcription factor 16 161 - -
Glsi08g1112 284 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Glsi08g1112 284 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1112 Glsi-ChrGlsi08 8186464 8187960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1112 1 284 NAC Transcription Factor Family AT1G01720 72.203 5.14e-152 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi08g1112 NAM 2.7e-38 No_clan