Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1111 ATGAGCTTGATGGTCGTTAAACACACTTTAAGACTTGACTGCAGTGCAACGTCCCATATAAAAGCACCACTTTGCCCTTCAATGGAACCTGAAGATGGCAAACAATCTTCCCACAAAAACCCATACACTGAACTGGAGCAAGTTAACTCTGATTTCATCCTAGCAATTAGTTTGCAAGAGCAAGAGAGAACCTCAACAATGCTCGCAACGATTGAAAGTGAAAGTGAAAGCGACGAAGGTGAAAGTGAATCCTCTTTTGATGATGTCGATGATGGAGACGATGAATTTGAGTTCCAAGAGTTTGAAACTGACCTCGAATTTCTTGAGGGTGAAGGAAGCAATGATGAAGAAATGGAAGAAGATGAGATTGATCCGGATGAATTATCTTACGAAGAGTTAATTGAGTTAGAAGAGTTTATAGGAGAAGAGAAAAGAGGATTAGCAGCTAATGATATTCCTTGCTGCTTGCATCCTTACAGTTTCCATCACGGTGGAATGGATCGCTGTGTGATATGCCAGGTTGAATATGAAGAAGGCGAAGCCCTGGTAGCACTTCATTGTGAGCACCCTTATCATACCGATTGCATAAGCAAGTGGCTTCAGATTAAGAAGGTTTGTCCAATATGTGGCAATGAAGTTTCAACTTCAAAGTTGGCCAAGAACCCATGA 669 0.4141 MSLMVVKHTLRLDCSATSHIKAPLCPSMEPEDGKQSSHKNPYTELEQVNSDFILAISLQEQERTSTMLATIESESESDEGESESSFDDVDDGDDEFEFQEFETDLEFLEGEGSNDEEMEEDEIDPDELSYEELIELEEFIGEEKRGLAANDIPCCLHPYSFHHGGMDRCVICQVEYEEGEALVALHCEHPYHTDCISKWLQIKKVCPICGNEVSTSKLAKNP 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1111 222 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 30 111 IPR043312 -
Glsi08g1111 222 MobiDBLite consensus disorder prediction 70 93 - -
Glsi08g1111 222 SMART ring_2 169 209 IPR001841 -
Glsi08g1111 222 FunFam E3 ubiquitin ligase BIG BROTHER-related 139 216 - -
Glsi08g1111 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 219 IPR013083 -
Glsi08g1111 222 ProSiteProfiles Zinc finger RING-type profile. 169 209 IPR001841 -
Glsi08g1111 222 SUPERFAMILY RING/U-box 131 215 - -
Glsi08g1111 222 MobiDBLite consensus disorder prediction 74 93 - -
Glsi08g1111 222 Pfam Ring finger domain 168 209 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1111 Glsi-ChrGlsi08 8181441 8182939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1111 120 213 C3H Transcription Factor Family AT3G63530 47.525 3.91e-25 97.4