Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1109 ATGGTGCACTCGGTGGCGTCGTGGTGGTGGTGGTGGCCGCTTGCTCTACTTATAACGGCGGGTGCCCTCGGAGGCAATGTCACCTACGACGGGAGGTCTTTAATCATCGACGGCCAACATAAAATCCTATTCTCCGGTTCAATTCACTATCCTCGCAGCACTCCTGAGATGTGGCCTTCGTTGATTGCGAGTGCCAAGAAGGGAGGAATAGATGTCGTACAAACTTACGTGTTTTGGAATCTTCACGAGCCCAAGCAAGGCCAGTACGACTTCAGTGGAAGGCGCGATATAGTGAAGTTCATTAAGGAAAACCAAGCACAGGGTTTGTATGTGACCCTCAGAATTGGACCATTCATTGAGAGTGAATGGACTTACGGGGGTTTACCCGTTTGGTTACATGACATTCCGGGCATTGTTTTCAGGTCTGATAATGAACCATTCAAGCATCACATGCAAAGGTTCACTACCAAAATAGTAAACATGATGAAATCAGCCAAACTTTTTGCTTCACAAGGAGGGCCCATCATACTATCACAGATCGAGAACGAGTATGGTATGATTGAAGGGGCTTTTCACGAAAGAGGACCACCTTATGTTCGTTGGGCAGCACAAATGGCCGTGGGACTTCAAACTGGTGTGCCCTGGGTAATGTGCAAGCAAGATGACGCTCCTGATCCAGTGATCAACGCGTGCAATGGTATGGAATGTGGGAAAACATTTAAGGGACCTAACTCGCCAAATAAGCCCTCACTGTGGACAGAGAACTGGACAAGTTTCTATCAAGTCTTTGGTGAAGAACCATACCTGAGATCAGCCGAAGATATTGCGTACAATGTTGCCTTGTTCATTGCAAAGAACGGAAGCTACGTCAATTACTATATGTACCATGGAGGAACCAATTTCGATAGAACAGCTTCTGCTTTTGTGATAACAGCTTATTATGATCAAGCTCCACTAGATGAATATGGTTTAATTAGGCAACCAAAATGGGGCCATCTAAAGGAACTACATGCTGCGATCAAGTCATGTTCAAAACCTTTGCTTTCTGCAACCCAAATTACACTCAACTTGGGCACACAACAAGAAGCGTATGTTTTCAGAAGGAGCTCAACAGAATGTGCAGCCTTTCTGGAAAATAGAGACAACAAAGAAGTCACAATTCGATTTCAAAATAATCCATATAAATTACCCCCAAAATCAATTAGTATTTTGCCAGACTGCAGGAATGTAGCCTTCAACACCGCCAAAGTAAGCATACAATACAGCACCAGAACTATGAAATCTATATTACAGTTTAAATCAGCTGAAAAGTGGGAAGTGTACAAAGAAGCCATCCCTAACTTCGACGATACTTCATTGAGAGCAAACAAGCTGCTAGATCAGATCAGCACGGCAAAAGATACATCTGACTATCTGTGGTACACTTTCAGGTTTCAAGACAATTCTTCTAATGCTCAATCTGTTCTTAGAACATTTAGCCAGGGCCATGTTTTGCACGCCTTTGTCAACGGAGTTTTAGTAGGTTCTGCACATGGCAGTCACAACAATATATCTTTCACCATGGAGAACAATGTCATATTGAGAAACGGGGACAACAATATTTCCTTCCTAAGTGCGACAGTTGGATTGCCGGATTCGGGAGCACACCAAGAGCGCAAAGTTGCTGGTTTGCATGGTGTCAGAGTTAATGGCAGAGATTTCACTAATCACCCATGGGGACATCAGGTTGGATTGTTAGGAGAGAAATTGCAAATCTATACAGCTATTGGATCAAGTAAAGTTCAATGGGAAAGGTTTGGAAGCTCTACCAATCCACTCACATGGTATAAGACGACATTTGATGCACCGGCAGGAAATGATCCTGTAGCACTTGACCTCGGTTCTATGGGAAAGGGTCAAGCTTGGGTTAATGGCCAGGGTATTGGCCGATATTGGGTATCTTTCCACACACCAAAAGGGAGTCCTTCACAGAAATGGTATCATATCCCTCGATCCTTCCTAAAACCTACAGGGAACCTACTAGTTCTATTAGAAGAAGAAACTGGGAACCCGCTAGGAATTTCTCTGGACACAGTTACATCATCATGA 2088 0.4397 MVHSVASWWWWWPLALLITAGALGGNVTYDGRSLIIDGQHKILFSGSIHYPRSTPEMWPSLIASAKKGGIDVVQTYVFWNLHEPKQGQYDFSGRRDIVKFIKENQAQGLYVTLRIGPFIESEWTYGGLPVWLHDIPGIVFRSDNEPFKHHMQRFTTKIVNMMKSAKLFASQGGPIILSQIENEYGMIEGAFHERGPPYVRWAAQMAVGLQTGVPWVMCKQDDAPDPVINACNGMECGKTFKGPNSPNKPSLWTENWTSFYQVFGEEPYLRSAEDIAYNVALFIAKNGSYVNYYMYHGGTNFDRTASAFVITAYYDQAPLDEYGLIRQPKWGHLKELHAAIKSCSKPLLSATQITLNLGTQQEAYVFRRSSTECAAFLENRDNKEVTIRFQNNPYKLPPKSISILPDCRNVAFNTAKVSIQYSTRTMKSILQFKSAEKWEVYKEAIPNFDDTSLRANKLLDQISTAKDTSDYLWYTFRFQDNSSNAQSVLRTFSQGHVLHAFVNGVLVGSAHGSHNNISFTMENNVILRNGDNNISFLSATVGLPDSGAHQERKVAGLHGVRVNGRDFTNHPWGHQVGLLGEKLQIYTAIGSSKVQWERFGSSTNPLTWYKTTFDAPAGNDPVALDLGSMGKGQAWVNGQGIGRYWVSFHTPKGSPSQKWYHIPRSFLKPTGNLLVLLEEETGNPLGISLDTVTSS 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1109 695 SUPERFAMILY (Trans)glycosidases 24 343 IPR017853 -
Glsi08g1109 695 Pfam Beta-galactosidase jelly roll domain 445 535 IPR025300 -
Glsi08g1109 695 SUPERFAMILY Galactose-binding domain-like 571 692 IPR008979 -
Glsi08g1109 695 PANTHER BETA-GALACTOSIDASE RELATED 19 693 IPR001944 GO:0004553|GO:0005975
Glsi08g1109 695 FunFam Beta-galactosidase 574 695 - -
Glsi08g1109 695 SUPERFAMILY Galactose-binding domain-like 401 554 IPR008979 -
Glsi08g1109 695 Gene3D Glycosidases 23 344 - -
Glsi08g1109 695 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 172 184 IPR019801 GO:0004553|GO:0005975
Glsi08g1109 695 Pfam Glycosyl hydrolases family 35 33 339 IPR031330 -
Glsi08g1109 695 FunFam Beta-galactosidase 293 419 - -
Glsi08g1109 695 PRINTS Glycosyl hydrolase family 35 signature 604 618 IPR001944 GO:0004553|GO:0005975
Glsi08g1109 695 PRINTS Glycosyl hydrolase family 35 signature 288 303 IPR001944 GO:0004553|GO:0005975
Glsi08g1109 695 PRINTS Glycosyl hydrolase family 35 signature 170 185 IPR001944 GO:0004553|GO:0005975
Glsi08g1109 695 PRINTS Glycosyl hydrolase family 35 signature 58 76 IPR001944 GO:0004553|GO:0005975
Glsi08g1109 695 PRINTS Glycosyl hydrolase family 35 signature 113 132 IPR001944 GO:0004553|GO:0005975
Glsi08g1109 695 PRINTS Glycosyl hydrolase family 35 signature 37 54 IPR001944 GO:0004553|GO:0005975
Glsi08g1109 695 PRINTS Glycosyl hydrolase family 35 signature 631 647 IPR001944 GO:0004553|GO:0005975
Glsi08g1109 695 PRINTS Glycosyl hydrolase family 35 signature 251 266 IPR001944 GO:0004553|GO:0005975
Glsi08g1109 695 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Glsi08g1109 695 FunFam Beta-galactosidase 23 344 - -
Glsi08g1109 695 Gene3D - 575 694 - -
Glsi08g1109 695 Pfam Beta-sandwich domain in beta galactosidase 347 417 IPR041392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1109 Glsi-ChrGlsi08 8167891 8174017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1109 27 693 Glycoside Hydrolase AT5G63800 62.963 0.0 907