Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1107 ATGGGAAGCCTTCAGCACCAGCAAGTACTTGGAGTTGGAGGTAGCAACCGCATAGCAGCCGTCAACGTCACCCCATCCAACAATCTCACTACATCATCTCATAATGATGATTGTTCAAATAAGCAGGTCTTAATTCCCATCTTTCACTCTCTCTCTACGTGTTTGTTTCAAGTTATTGCCCTTCAAGTTCCCAAGTGTTATTTATCTTTTGGTGCAATGACGCAGAAACCCGGATGGAGAAAGTTTCTGTCATTCGTTGGTCCTGGTTTTCTGGTCTCACTGGCTTACCTTGATCCTGGAAACTTGGAAACTGATCTGCAAGCTGGAGCTGACCACCAATATGAGCTGCTGTGGGTGATACTTATTGGGCTAGTCTTTGCTCTCATAATTCAGTCATTGTCTGCAAATCTTGGCGTAAGCACTGGCAAACACCTTTCAGAATTATGTAAAGCCGAATACCCATTATTTGTCAAGTATTGTTTATGGTTGTTAGCCGAGCTTGCTGTCATAGCTGCAGACATACCCGAAGTAATTGGCACAGCCTTTGCGTTGAACATACTCTTCCACATCCCAGTGTGGGCGGGAGTTCTATTGACTGGCTTGAGCACTCTCTTGCTTCTGGGTCTACAGAGATTTGGGGTGAGGAAGCTGGAACTGCTAATATCTGTCCTAGTATTTATAATGGCAGGATGTTTCTTTGGGGAAATGGGCTACGTAAAGCCCCCAGCCTCTGGGGTCATAAAGGGGATGTTTGTGCCCAAACTCAGTGGTCAAGGAGCCACAGGCGATGCTATAGCCCTTCTCGGGGCCCTTGTCATGCCGCACAACCTCTTCCTCCACTCAGCTCTTGTGCTCTCTAGAAAAGTACCCAATTCTGTTCGTGGCATCAATGACGCTTGTAGATACTTCCTGATAGAAAGTGGGTTCGCACTCTTTGTCGCATTTCTAATCAACGTTGCAGTAGTTTCTGTATCCGGCACTGTTTGTTCAGCCAACAGCCTTTCTAATGATAATTCAAATCGATGCAACAATCTTACTCTTAATTCCGCTTCTTTCCTTCTCCAGAATGTGTTGGGAAAGTCCAGCTCAACTGTTTATGCCATAGCACTACTAGCCTCAGGACAAAGCTCAGCTATCACTGGCACCTATGCAGGGCAATACATTATGCAGGGTTTCTTGGACCTCAAGATGAAAAATTGGACGAGGAACTTGATGACTAGGACCATTGCCATAACACCTAGTCTTATTGTCTCCATTATTGGGGGATCCTCTGGGGCAGGCCGCCTCATCATCATTGCCTCGATGATACTTTCATTTGAGCTTCCGTTCGCTTTGATTCCGCTTCTCAAGTTTAGCAGCAGCAGTACCAAGATGGGACCTCACAAGAATTCTATGATTATAATAGTCATCTCGTGGATTCTCGGGTTCGGAATTATCGGTATCAATGTGTATTACCTGAGTACGGGCTTCGTGGGTTGGCTAATTCATAGCAGTCTACCGAAGGTGGCAAATGTGTTTATTGGGATCATAGTGTTTCCTCTAATGGCACTGTACATACTGGCGGTATTCTACCTAACCTTCAGAAAAGACACTGTCAAAACATTTACCGAGACGAAGAACGACCCCGTAGTGCAAACTCACATGGAGAAGGGGACCATGAATGCTAATGGGCAATTAGAGTTGGGTCATGCTCCTTACAGAGAGGATTTAGCCGACATCCCACTGCCGGAATAG 1734 0.4573 MGSLQHQQVLGVGGSNRIAAVNVTPSNNLTTSSHNDDCSNKQVLIPIFHSLSTCLFQVIALQVPKCYLSFGAMTQKPGWRKFLSFVGPGFLVSLAYLDPGNLETDLQAGADHQYELLWVILIGLVFALIIQSLSANLGVSTGKHLSELCKAEYPLFVKYCLWLLAELAVIAADIPEVIGTAFALNILFHIPVWAGVLLTGLSTLLLLGLQRFGVRKLELLISVLVFIMAGCFFGEMGYVKPPASGVIKGMFVPKLSGQGATGDAIALLGALVMPHNLFLHSALVLSRKVPNSVRGINDACRYFLIESGFALFVAFLINVAVVSVSGTVCSANSLSNDNSNRCNNLTLNSASFLLQNVLGKSSSTVYAIALLASGQSSAITGTYAGQYIMQGFLDLKMKNWTRNLMTRTIAITPSLIVSIIGGSSGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIIVISWILGFGIIGINVYYLSTGFVGWLIHSSLPKVANVFIGIIVFPLMALYILAVFYLTFRKDTVKTFTETKNDPVVQTHMEKGTMNANGQLELGHAPYREDLADIPLPE 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1107 577 Pfam Natural resistance-associated macrophage protein 103 464 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi08g1107 577 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 80 456 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi08g1107 577 PRINTS Natural resistance-associated macrophage protein signature 189 208 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi08g1107 577 PRINTS Natural resistance-associated macrophage protein signature 402 419 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi08g1107 577 PRINTS Natural resistance-associated macrophage protein signature 161 187 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi08g1107 577 PRINTS Natural resistance-associated macrophage protein signature 214 235 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi08g1107 577 PRINTS Natural resistance-associated macrophage protein signature 264 287 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi08g1107 577 PRINTS Natural resistance-associated macrophage protein signature 374 393 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi08g1107 577 PRINTS Natural resistance-associated macrophage protein signature 434 453 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi08g1107 577 Hamap Divalent metal cation transporter MntH [mntH]. 73 490 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi08g1107 577 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 62 534 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi08g1107 577 NCBIfam Nramp family divalent metal transporter 87 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1107 Glsi-ChrGlsi08 8155960 8159081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1107 75 576 Inorganic Solute Cotransporters AT1G15960 61.554 0.0 617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1107 08 8155960 8159081 Glsi08g1107 08 8155960 8159081 ECH