Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1103 ATGTCAACCCAGAATCGTCGTTCATCGTTTTCTTCCTCGACGACGTCATCTCTGGCTAAGCGGCATGCATCGTCGTCGGAGAATGTGGGGAAGGTTATGGCGGCCCCTCCACACATGGCTAAGAAACGAGCGCCTCTTAGTAACCTAACCAATCAAAAGAATGTGTCTCACAGTGTTTTGCGGAACTCATTGCCATCATCTACTTTGGTACCATGCGCAACTAAAATTGCTAAGACAAAGAAGAAACCCCCTGCATGCACCAGTAGCTCAGCAATTGCCGGGAATAAACTACCCGCTTTATCGAATTTTAAATCAAGTGCAGTTGTTTTACCTAAGGTCCCTTCTTTTTCACAAAGGGATGAAGCTGCTCCTGTTACTGTCACTATTTCTAGCAGCATGGATACTTCTCCGAGTAAATCAGATGGGATGTCAGTTTCTTTGGATGAGACAATGTCTACCTGTGATTCTTTCAAGAGTCCTGAAATTGAATACATGGACAAAAGTGATGCTTCAGCTATTGATTCTATTGACAGAAAGACATTCAGCAATATGAACATCTCAGATAATACAGAGCCAGCAGGCAACGTTTGTAGTAGAGACATACTTGTTGATTTGGAACGAGATGACAAAATTGTCAATGTCGACAATAATTACATGGATCCCCAGCTTTGTGCGACCTTTGCTTGTGATATCTACAAGCATTTGCGTGCATCGGAGGCAAAGAAGAGGCCCTCCACCGACTTCATGGAGAGAATGCAGAAGGACATAAATACCAGCATGCGTGCTATATTAATTGACTGGCTTGTGGAGGTGGGTGAAGAGTATCGGCTTGTACCTGATACATTATATTTGACAGTGAACTACATAGATCGGTATCTTTCAGGAAATGCGATGAATAGGCAAAAGTTACAATTACTTGGAGTTGCCTGCATGATGATTGCCTCTAAGTATGAGGAGATTTGTGCACCTCAGGTGGAGGAATTTTGCTATATAACTGATAACACATACTTCAAGGAAGAGGTTTTGCAAATGGAATCTGCTGTCTTGAATTACCTTAAGTTCGAAATGACAGCGCCGACAACTAAATGTTTCTTAAGACGATTTGTTCGTGCAGCTCAAGGAGTTAACGAGGTCCCATCATTGCAGTTAGAGTGTTTGACCAACTATATTGCCGAATTGTCTCTGTTGGAGTACAGTATGCTTTGTTATGCCCCATCACTTATAGCTGCTTCTGCAATTTTCCTGGCCAAATTTATACTTTTCCCTTCAAAGAAACCATGGAATTCTACATTGCAGCATTACACGCTCTACCAGGCTTCTGATTTGTGTGACTGTGTAAAGGATCTCCATCGTCTGTGTTGTAACAGCCATAATTCTAACTTACCTGCAATTCGGGAGAAATACAGTCAGCACAAGTACAAATACGTGGCAAAGAAGTTCTGCCCTCCATTAATACCTCGAGAATTTTTCCAGAATTGA 1479 0.4219 MSTQNRRSSFSSSTTSSLAKRHASSSENVGKVMAAPPHMAKKRAPLSNLTNQKNVSHSVLRNSLPSSTLVPCATKIAKTKKKPPACTSSSAIAGNKLPALSNFKSSAVVLPKVPSFSQRDEAAPVTVTISSSMDTSPSKSDGMSVSLDETMSTCDSFKSPEIEYMDKSDASAIDSIDRKTFSNMNISDNTEPAGNVCSRDILVDLERDDKIVNVDNNYMDPQLCATFACDIYKHLRASEAKKRPSTDFMERMQKDINTSMRAILIDWLVEVGEEYRLVPDTLYLTVNYIDRYLSGNAMNRQKLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESAVLNYLKFEMTAPTTKCFLRRFVRAAQGVNEVPSLQLECLTNYIAELSLLEYSMLCYAPSLIAASAIFLAKFILFPSKKPWNSTLQHYTLYQASDLCDCVKDLHRLCCNSHNSNLPAIREKYSQHKYKYVAKKFCPPLIPREFFQN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1103 492 Gene3D - 230 478 - -
Glsi08g1103 492 FunFam Mitotic cyclin 6 244 344 - -
Glsi08g1103 492 FunFam Cyclin A1 346 478 - -
Glsi08g1103 492 CDD CYCLIN_AtCycA_like_rpt1 220 355 - -
Glsi08g1103 492 PANTHER CYCLINS 169 470 IPR039361 -
Glsi08g1103 492 PIRSF Cyclin_A_B_D_E 1 487 IPR046965 GO:0016538|GO:0044772
Glsi08g1103 492 Gene3D - 244 357 - -
Glsi08g1103 492 Pfam Cyclin, N-terminal domain 230 356 IPR006671 -
Glsi08g1103 492 ProSitePatterns Cyclins signature. 261 292 IPR006671 -
Glsi08g1103 492 MobiDBLite consensus disorder prediction 1 24 - -
Glsi08g1103 492 MobiDBLite consensus disorder prediction 1 53 - -
Glsi08g1103 492 Pfam Cyclin, C-terminal domain 359 478 IPR004367 -
Glsi08g1103 492 SMART Cyclin_C_2 359 482 IPR004367 -
Glsi08g1103 492 CDD CYCLIN_AtCycA-like_rpt2 359 473 - -
Glsi08g1103 492 SMART cyclin_7 363 451 IPR013763 -
Glsi08g1103 492 SMART cyclin_7 266 350 IPR013763 -
Glsi08g1103 492 SUPERFAMILY Cyclin-like 359 483 IPR036915 -
Glsi08g1103 492 SUPERFAMILY Cyclin-like 220 356 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1103 Glsi-ChrGlsi08 8125703 8129057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1103 4 492 Core Cell Cycle Gene Families AT1G44110 65.650 0.0 617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1103 08 8125703 8129057 Glsi08g1103 08 8125703 8129057 ECH