Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1102 ATGAGTTTCCTGAGGCCCTCTGCATTGTACCGCTTTCTTATCACTTACCCTTCCCTGCGATGGATGCCTTGTCAGAGTTGGGGCTTTCTCCGATGGCCGGGTCTTGATGGGTTCTTGAGACTTTTGGTCCTGCTGCTTCTGTGGTCTATGTTTTCGGAGCTTCGCTATATACCCTCATCTTCTATGTGCCCTACTCTTGGTGTTGGCGATCGAGTCATCGTCGAAAAGGCCTCATATTACATCAGGAGTCCTGCTATACGTGATATTATAATATTCCGGGATCCGACACAGCCATCTAGAGAGAAGCCAGAAGATGTATTTATCAAAAGAATTGTCGCAAAATCTGGAGACTTTGTTGAGGTTCATCGTGGGTGTCTCTACATCAACGGGGTTGCTCAGAAGGAAGATTATATAGCAGAGCGGCCAACATACACAACAAACTTGACTTATGTGCCAAAAGGCTATGTTTATGTTTTGGGGGATAATCGTAACAACAGCTATGACTCCCATGTTTGGGGACCACTTCCTGTCAAAAACATAGTTGGAAGATATGTCATGTGTTGTCACAGGCCCTCAAATATTTGA 585 0.4513 MSFLRPSALYRFLITYPSLRWMPCQSWGFLRWPGLDGFLRLLVLLLLWSMFSELRYIPSSSMCPTLGVGDRVIVEKASYYIRSPAIRDIIIFRDPTQPSREKPEDVFIKRIVAKSGDFVEVHRGCLYINGVAQKEDYIAERPTYTTNLTYVPKGYVYVLGDNRNNSYDSHVWGPLPVKNIVGRYVMCCHRPSNI 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1102 194 PRINTS Bacterial leader peptidase 1 (S26A) family signature 50 66 IPR000223 GO:0006508|GO:0008236|GO:0016020
Glsi08g1102 194 PRINTS Bacterial leader peptidase 1 (S26A) family signature 107 119 IPR000223 GO:0006508|GO:0008236|GO:0016020
Glsi08g1102 194 PRINTS Bacterial leader peptidase 1 (S26A) family signature 151 170 IPR000223 GO:0006508|GO:0008236|GO:0016020
Glsi08g1102 194 SUPERFAMILY LexA/Signal peptidase 50 187 IPR036286 -
Glsi08g1102 194 CDD S26_SPase_I 53 183 IPR019533 GO:0004252|GO:0006465
Glsi08g1102 194 ProSitePatterns Signal peptidases I signature 3. 156 169 IPR019758 GO:0004252|GO:0016020
Glsi08g1102 194 FunFam Peptidase/ serine-type peptidase 59 188 - -
Glsi08g1102 194 Pfam Signal peptidase, peptidase S26 39 186 IPR019533 GO:0004252|GO:0006465
Glsi08g1102 194 ProSitePatterns Signal peptidases I serine active site. 59 66 IPR019756 GO:0004252|GO:0016020
Glsi08g1102 194 Gene3D Umud Fragment, subunit A 59 191 - -
Glsi08g1102 194 PANTHER SIGNAL PEPTIDASE I 37 192 IPR000223 GO:0006508|GO:0008236|GO:0016020
Glsi08g1102 194 NCBIfam signal peptidase I 40 187 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1102 Glsi-ChrGlsi08 8120485 8123790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1102 62 183 MADS-box Gene Family AT1G29960 31.707 2.02e-09 51.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1102 08 8120485 8123790 Glsi08g1102 08 8120485 8123790 ECH