LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi08g1096	ATGGGTAAGCCATTGATGTTCCTTTCCCTCCTCATCTCCCTCATCTCCACCTTATCCGCAGCTACTTCTGCTTCACGCTCTTCTTCATGTCCCCTCGATCTCAGCTACGTTCAAACCTTCCCCTGGGACACTTCAACTTGCCGTGGCTCGAACGGAACGGATCGCTGCTGCCAAACTCTGCTTAGCGTCTTCGGTATTGGGCTTGCCCAGCACCTCAAAGACACCTCCATATTTGAACTTCCTGATTCAAATTCTTCCTCTTCTTGCCTATCTGAATTCCAAGCCAGGCTTGCAACTTTGTTGCCAGTCCAGCCCTCTCTGGTCTATTCCTGCTTCCATAACTCGACCCAGTTTGTTACTAATTCTTCCAGTTGTGCAGGAATAAGAACTATCCAAGATTTCGATCGAAAGGTAGGCATGATGACCCCATTAGATACAGCTTGTAATGGGGACCTGACGGGGCTAACTCGGTGCGGCATTTGCCTTGATGCTGGCATGAAAGTGACTTCCCAGTTGACTGCTATCGACCCAAATGCCACAAAATGTTTTTACTTCACAATCTTATATGCTGCAGCCATTGTTAACCAATTTGGTCCAAAAGATGCAAGAACAGCTAGTTGCATACTAGGCATGCCTCTGTCTAGTGTAGCAAAAAAAAGGTCATCAAACAGAGCGCGCGCACTGAAGCTGGGTTTTGGGTTGTTGGGTGCTCTTATTGGAGTTCTTTTTGCTATTGTTTTCATCATCGTGTACAGGAAGTGGGATAAGAGGAGGAGAGAAAATATTCATCACAGAGAAGTTGTAAGCAGTGTCAGGGCCAGTGTTTTGCCTTATACTGGTGCAAAATGGTTTCATTTGTCGGAACTTGAACGAGCTACTGACAAATTTTCGCAGCGAAATATGATTGGTCAAGGATCTGATGGGATTGTGTACAAAGGGACTCTTTCAGATGGCACTTTGGTTGCAGTTAAAGAAATCTTTGATTTGGAAACTAAAGGGGATGAAGAGTTTTGCTATGAAGTGGAGATCATAAGCAAAATAAAGCACAGGAATCTAGTTGCTCTCCGAGGTTGTTGTGTCACAAGTGATAATGTGAAAGGTAAGAGGAGGTTTCTAGTTTATGACTATATGCCTAATGGCAGCCTGAGTTTCCAATTATCTCGTTCTGGGGCTGACAAGCTAACATGGCCACAGAGAAAGAATATACTTCTTGATGTGGCCAAAGGGCTTGCTTATTTGCATTACGATATCAAACCCCCCATTTATCACCGCGACATAAAGGCCACAAACATACTTCTGGACTCCACAATGAAAGCTAAAGTGGCAGACTTTGGATTGGCCAAGCAAGGCAGTGAAGGGCAGTCTCATCTCACCACAAGGGTTGCTGGCACCTATGGTTATTTAGCACCAGAGTATGCTCTGTATGGGCAACTGACAGAGAAAAGTGATGTTTACAGCTTTGGCATTGTGATTCTTGAAGTCATGAGCGGAAGAAAAGTGCTTGAAACTTCAAATTCATCGGTTGTTTTGATCACAGATTGGGCCTGGACGCTCGCAAAATCAGGGAAGATAGAGGAAATTTTGGATGAGTCAATAAGAGAAGGAGGACCAAAAAGGATCATGGAAAGGTTTGTTCTTGTTGGGATTCTTTGTGCTCATGTAATGGTGGCATTGAGGCCTACTATTTCTGAGGCCCTCAAAATGTTAGAAGGTGACATTGACATTCCCAATTTACCAGACAGGCCAGTGCCACTTGGTCATGAGTCCTTTCAATCTTCTCTGTTGTATGGTTTACCGAGAAGTGGAAGGTCTACACCATATGGTTCATCAAGTATGAGACCGATGTAG	1848	0.4448	MGKPLMFLSLLISLISTLSAATSASRSSSCPLDLSYVQTFPWDTSTCRGSNGTDRCCQTLLSVFGIGLAQHLKDTSIFELPDSNSSSSCLSEFQARLATLLPVQPSLVYSCFHNSTQFVTNSSSCAGIRTIQDFDRKVGMMTPLDTACNGDLTGLTRCGICLDAGMKVTSQLTAIDPNATKCFYFTILYAAAIVNQFGPKDARTASCILGMPLSSVAKKRSSNRARALKLGFGLLGALIGVLFAIVFIIVYRKWDKRRRENIHHREVVSSVRASVLPYTGAKWFHLSELERATDKFSQRNMIGQGSDGIVYKGTLSDGTLVAVKEIFDLETKGDEEFCYEVEIISKIKHRNLVALRGCCVTSDNVKGKRRFLVYDYMPNGSLSFQLSRSGADKLTWPQRKNILLDVAKGLAYLHYDIKPPIYHRDIKATNILLDSTMKAKVADFGLAKQGSEGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEVMSGRKVLETSNSSVVLITDWAWTLAKSGKIEEILDESIREGGPKRIMERFVLVGILCAHVMVALRPTISEALKMLEGDIDIPNLPDRPVPLGHESFQSSLLYGLPRSGRSTPYGSSSMRPM	615

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi08g1096	615	SUPERFAMILY	Protein kinase-like (PK-like)	274	570	IPR011009	-
	Glsi08g1096	615	CDD	STKc_IRAK	302	571	-	-
	Glsi08g1096	615	Gene3D	Phosphorylase Kinase; domain 1	256	376	-	-
	Glsi08g1096	615	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	421	433	IPR008271	GO:0004672\|GO:0006468
	Glsi08g1096	615	PANTHER	OS01G0750732 PROTEIN	53	577	-	-
	Glsi08g1096	615	ProSiteProfiles	Protein kinase domain profile.	296	556	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi08g1096	615	FunFam	Receptor-like serine/threonine-protein kinase At4g25390	261	376	-	-
	Glsi08g1096	615	SMART	serkin_6	296	569	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi08g1096	615	Pfam	SPARK	26	182	IPR043891	-
	Glsi08g1096	615	Gene3D	Transferase(Phosphotransferase) domain 1	377	575	-	-
	Glsi08g1096	615	Pfam	Protein kinase domain	298	566	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi08g1096	615	FunFam	probable LRR receptor-like serine/threonine-protein kinase RKF3	377	577	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi08g1096	Glsi-ChrGlsi08	8087107	8088954	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi08g1096	23	591	Receptor kinase-like Gene Family	AT1G11050	52.891	0.0	585

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RKF3	Glsi08g1096		Pkinase	2.5e-44	CL0016