Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi08g1089 | ATGGAAGAAGGGGTGAGCTCGGGATGCAGATCGAAGAGCTCGGGAGGAAATGGAAGCAGGGAGGGCTTGGTGGCGAAGATGCTGAGGACGAGTGCATTCAAGGGTGCAAATGTGTTCATGTCTCGGAAACTCGTGCCGCCGGAAGTCTTCGACGCACTTCACGATGCGCTTAAGAATAATGGCGCACGCGTCGAGCTTTGCTGCGACCCTTCGCGCAATGGGCCCCTCGATTACCACATCATATCCCACGATCACGAGAAGCTTGACGATCTTAAAGCCAGCGGTTGTAAGCTGCTTGGTCCTCAATGTGTGCTTTCATGTGCAAAAGAACAAAGACCTCTGCCGAAACAAGGTTTCACTTGTTGCCTTGCCATGGATGGTGTCAAAGTACTTGCATCTGGCTTTGATATGGATGAGAAGGTTAAGATAGGAGAGTTGGTAACTTCAATGGGAGGAGTTCTACATACTAAAGCATCACTGGATGTCAACTTTGTCGTTGTGAAGAATGTTTTAGCTGCAAAGTACAAGTGGGCTTTGAATATCCTGAAGAAACCAATAGTGACTTTTAATTGGTTAAAGCAATGTTCTATTGAGCATCGTGTTGTCCCTCAAGAGTCATATAGGGTTCCTCCTTTTTCTGGGTTGACAATTTGTGTTACCAGAATTCCAGCAGATGAGCGCAGGGAGATTGAGAAGCTGATTTTACAAAATGGTGGAAAATACTCTGCCGAGCTAACAAAGAAGTGCACACATTTGATTTCTGATATATCCTTCCCATAGATGAACAGAGAGGAACTGAGATGCATTTGGACTAGAATTCAGAATGAATCTGTATCTTCACATAAAGTATCTATCGATTACATAACAGCACAACATAGCCAAGAAAAAGAAATTGGGAAATTGCAATCTGCAGCATCGTCTGGGGCTACAGATTCACATGTGCCTGTTATTTCCTGTGGCGAGTTTGTGGATAGAGATCCAGAAGCTATGCAGTCAGAAAACATGTCTTCTGCTGTTTTAGATGCTCCTACCTTTGTTAGAGAGGTAGAAGCTGATGCACCTCCAGTGCTGCCGAGTAATGAACCAAACCTTGGCGGTGCTGTTGCTAATGATTCTGAATCTGATGATAATGACCTGTACTTATCAGAGTGCAGAATATTGCTTGTTGGTTTTGAAGCTTCTGAAATGCGTAAAGTAGTTAATATGGTTCGTAAAGGAGGAGGATCCCGATATATGTCACTTAATGACAAATTGACGCACATAGTAATTGGAAATCCTTCAGAAACGGAAAAGAAGAATGTAAGGAGTGTTGCTGCTTTGGGTGTCATTTTTGTTGTTAAAACCACGTGGCTTGAAGATTGTGACCGTGAAAAGAAAGAAGTCCCTGTTCTTAGGAGACACATGGCACATGATCTTCTTCTTCCAAAAGGTAAAAGCTCCAACGCTCATCAAACCTTGGAGGCTGATCAGGTGGTGGGTAGTAATATGGACTCTAGAATTGTGATGCCATTATCTTTTGAGAACAAGAAAGAGAAGAAGCAGGAGGTTGGTGTAAATAGTCAAAACTTTCTTAAATCTATGGGCAGATCTACCCAGCAAAATCAACTTCCTGTTGTTATCAATAAAATGGAGGGTCAACAGAAGATGCAACATGACTCCACTTTTCAGTGTGTGAAGTCATCAACTGTTTTCAGAGGGAGAAAATTTTGTTTTTCAAATTCTTTTCCTGAAGAGAGACGAGATGAGATTGTTCAATGGATAAGTCAAGGGGGAGGAGAGGTAGTAAATGGGCACAAAAAACAGAATGTTCACTATACTGTTGAGTGCCATGGTGTAACGCCAAGATTGGAGGATATTTCTCAAACTACATATATTTCCACTCACTGGATACGCTCTTGTTTAGAGGATGAATCCTTGCTGGATGTTGATAGTCACATTCTTTATTCTCCACTTCCCTGCCGTGTACCCTTGCCTGGGTTTGAAAGCTTCCGGTTTTGTGTTTCACAGTATGAGGAGAAAGACAGAATTCTACTTCGAAACTTGTGTTTTGTTCTTGGAGCTAAATTTGTGGAGAAGTTGACTAAGAAAGTCACCCACTTATTGTGTAAATTCATCAATGGGCCCAAGTATGAGGCTGCTTGTAAGTGGGGGATCCAATCGGTTACATCTGAATGGATATTTGAATGTGTCAAACAGAATACAGTTGTTGCAGTTGATCAATTTTTACCAAAAAAAGTCACTGCTCAAGATCAAGAGGCAGGAATTTTTACAGTGAGTCAATTTCCTACCCAGGCTGTTCAAATGATAAGTGGAGACAGCTCCTCTCAGTTTTCAAGTCGATCACAAAATTTGAGAAACACACCAAATCAAAATGTAGGTAGTCAAGTTGACAATTATGGGGTTGAAGGGAAAATGTCAAGTGCTTACAGCAAAAAGGCTAGGCTTTTGGAAGAGCCTGGCCTATGCAATAAGGTGCCTTCTGCTGCTGATTCAATTATCCATATTTATGATATGAATTCTACTGGAGAAAATATGCCAAAAGATGCTAGCGAGGTTTCTCAACCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACTAGCAAGATGCATGATCAGAAGTCCCCAGGGAATACAGGGAGTGAACGAGGTGTATCCTTCAAGCAAAAGATTTTCTCATCTGGTTGTTCTGTCCTTGGTGAAGACCAATCAAATCCTCATACTGTCATTGGATTATCTAAACACTGAAGTGGTAGAAATGAGGATAACGATGACGCTTCTCAAGATGGAAGAGCAGGCATTTATGATAATTTTAGTGAAACACAGACAGAATCTCAGGTTGTTGGCTATGAAGAAGATTTATCAGGAAGGCAAATGCTTATAGACAGAGTCCGAACTCGAAGTAGCATGCCTTGA | 2925 | 0.4191 | MEEGVSSGCRSKSSGGNGSREGLVAKMLRTSAFKGANVFMSRKLVPPEVFDALHDALKNNGARVELCCDPSRNGPLDYHIISHDHEKLDDLKASGCKLLGPQCVLSCAKEQRPLPKQGFTCCLAMDGVKVLASGFDMDEKVKIGELVTSMGGVLHTKASLDVNFVVVKNVLAAKYKWALNILKKPIVTFNWLKQCSIEHRVVPQESYRVPPFSGLTICVTRIPADERREIEKLILQNGGKYSAELTKKCTHLISDISFPXMNREELRCIWTRIQNESVSSHKVSIDYITAQHSQEKEIGKLQSAASSGATDSHVPVISCGEFVDRDPEAMQSENMSSAVLDAPTFVREVEADAPPVLPSNEPNLGGAVANDSESDDNDLYLSECRILLVGFEASEMRKVVNMVRKGGGSRYMSLNDKLTHIVIGNPSETEKKNVRSVAALGVIFVVKTTWLEDCDREKKEVPVLRRHMAHDLLLPKGKSSNAHQTLEADQVVGSNMDSRIVMPLSFENKKEKKQEVGVNSQNFLKSMGRSTQQNQLPVVINKMEGQQKMQHDSTFQCVKSSTVFRGRKFCFSNSFPEERRDEIVQWISQGGGEVVNGHKKQNVHYTVECHGVTPRLEDISQTTYISTHWIRSCLEDESLLDVDSHILYSPLPCRVPLPGFESFRFCVSQYEEKDRILLRNLCFVLGAKFVEKLTKKVTHLLCKFINGPKYEAACKWGIQSVTSEWIFECVKQNTVVAVDQFLPKKVTAQDQEAGIFTVSQFPTQAVQMISGDSSSQFSSRSQNLRNTPNQNVGSQVDNYGVEGKMSSAYSKKARLLEEPGLCNKVPSAADSIIHIYDMNSTGENMPKDASEVSQPVPDVAAAIEDLLEQTSKMHDQKSPGNTGSERGVSFKQKIFSSGCSVLGEDQSNPHTVIGLSKHXSGRNEDNDDASQDGRAGIYDNFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSMP | 974 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi08g1089 | 974 | CDD | BRCT_TopBP1_rpt2_like | 658 | 733 | - | - | |
| Glsi08g1089 | 974 | PANTHER | DNA REPLICATION REGULATOR DPB11-RELATED | 27 | 972 | - | - | |
| Glsi08g1089 | 974 | FunFam | Transcription coactivator | 556 | 653 | - | - | |
| Glsi08g1089 | 974 | Pfam | BRCA1 C Terminus (BRCT) domain | 378 | 454 | IPR001357 | - | |
| Glsi08g1089 | 974 | MobiDBLite | consensus disorder prediction | 901 | 954 | - | - | |
| Glsi08g1089 | 974 | MobiDBLite | consensus disorder prediction | 873 | 889 | - | - | |
| Glsi08g1089 | 974 | Gene3D | BRCT domain | 655 | 749 | IPR036420 | - | |
| Glsi08g1089 | 974 | Gene3D | BRCT domain | 210 | 280 | IPR036420 | - | |
| Glsi08g1089 | 974 | Gene3D | BRCT domain | 367 | 465 | IPR036420 | - | |
| Glsi08g1089 | 974 | Gene3D | BRCT domain | 556 | 653 | IPR036420 | - | |
| Glsi08g1089 | 974 | CDD | BRCT_TopBP1_rpt2_like | 210 | 255 | - | - | |
| Glsi08g1089 | 974 | Gene3D | BRCT domain | 77 | 119 | IPR036420 | - | |
| Glsi08g1089 | 974 | SUPERFAMILY | BRCT domain | 656 | 744 | IPR036420 | - | |
| Glsi08g1089 | 974 | ProSiteProfiles | BRCT domain profile. | 559 | 647 | IPR001357 | - | |
| Glsi08g1089 | 974 | Pfam | twin BRCT domain | 664 | 725 | IPR001357 | - | |
| Glsi08g1089 | 974 | Pfam | twin BRCT domain | 129 | 191 | IPR001357 | - | |
| Glsi08g1089 | 974 | Pfam | twin BRCT domain | 215 | 254 | IPR001357 | - | |
| Glsi08g1089 | 974 | MobiDBLite | consensus disorder prediction | 937 | 952 | - | - | |
| Glsi08g1089 | 974 | SUPERFAMILY | BRCT domain | 84 | 210 | IPR036420 | - | |
| Glsi08g1089 | 974 | Gene3D | BRCT domain | 122 | 209 | IPR036420 | - | |
| Glsi08g1089 | 974 | FunFam | Transcription coactivator | 358 | 468 | - | - | |
| Glsi08g1089 | 974 | SUPERFAMILY | BRCT domain | 376 | 462 | IPR036420 | - | |
| Glsi08g1089 | 974 | ProSiteProfiles | BRCT domain profile. | 207 | 255 | IPR001357 | - | |
| Glsi08g1089 | 974 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Glsi08g1089 | 974 | ProSiteProfiles | BRCT domain profile. | 125 | 209 | IPR001357 | - | |
| Glsi08g1089 | 974 | Pfam | BRCT domain, a BRCA1 C-terminus domain | 561 | 644 | IPR001357 | - | |
| Glsi08g1089 | 974 | ProSiteProfiles | BRCT domain profile. | 660 | 743 | IPR001357 | - | |
| Glsi08g1089 | 974 | ProSiteProfiles | BRCT domain profile. | 376 | 468 | IPR001357 | - | |
| Glsi08g1089 | 974 | SMART | BRCT_7 | 561 | 637 | IPR001357 | - | |
| Glsi08g1089 | 974 | SMART | BRCT_7 | 657 | 733 | IPR001357 | - | |
| Glsi08g1089 | 974 | SMART | BRCT_7 | 378 | 458 | IPR001357 | - | |
| Glsi08g1089 | 974 | SMART | BRCT_7 | 122 | 199 | IPR001357 | - | |
| Glsi08g1089 | 974 | SMART | BRCT_7 | 209 | 276 | IPR001357 | - | |
| Glsi08g1089 | 974 | SMART | BRCT_7 | 30 | 111 | IPR001357 | - | |
| Glsi08g1089 | 974 | MobiDBLite | consensus disorder prediction | 772 | 798 | - | - | |
| Glsi08g1089 | 974 | FunFam | Transcription coactivator | 122 | 210 | - | - | |
| Glsi08g1089 | 974 | SUPERFAMILY | BRCT domain | 561 | 649 | IPR036420 | - | |
| Glsi08g1089 | 974 | CDD | BRCT | 128 | 195 | - | - | |
| Glsi08g1089 | 974 | MobiDBLite | consensus disorder prediction | 869 | 889 | - | - | |
| Glsi08g1089 | 974 | SUPERFAMILY | BRCT domain | 210 | 262 | IPR036420 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi08g1089 | 27 | 973 | Core DNA Replication Machinery Family | AT1G77320 | 50.195 | 0.0 | 884 |