Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1086 ATGGGGAGGGGTAAGATTGAGATCAAGAGGATTGAGAACTCGAGCAACAGGCAAGTCACCTACTCAAAGAGAAAGAATGGGATCCTAAAGAAGGCAAATGAAATTACTGTTCTATGCGATGCCCAAGTTTCCCTGATTATCTTTGCTGCATCTGGAAAGATGCATAACTACATCAGCCCTTCTACCACGTTGATTGATATCCTGGACAGATACCACAAAACGTCTGGGAAGCCGCTCTGGGACGCCAAGCATGAGAACCTTAGCAATGAAATTGATAGACTCAAGAAAGAGAACGACAGCATGCAAATTGAGCTCAGGCACTTGAAAGGGGAGGACATCACTTCACTGAATTACAAGGAGCTGATGGCCTTAGAGGATGCTCTTGAAAATGGCCTCACTGGTGTCCGCGAGAAACAGATGGAAGCGCACAGGAGGTTCAGGAGAAACGGCAAGATTTTGGAGGAGGAAAATAGGGAACTCAATTATCTGCTGCAACAACACTTGGCAGTGGAAGGTGTGAGAGACGTGGACAATGGATTTGAGCAGAGCATAAGGGATTTCAATTCCCAGATGCCATTTGCCTTCCGTGTGCAGCCTCTACAGCCAAACCTTCAGGAGAGGATGTTGATTGACATCCTTGACAAATACCACAAAACGTCTGGGAAGAGGCTGTGGGACGCTAAGCATGAGAACCTCAGCAATGAAATTGATAGACTCAAGAAAGAGAACGATAGCATGCAAATCGAGCTCAGGCACTTGAAGGGGGAGGATATTAACTCACTGAATTACAAGGAGCTGATGGCCTTAGAAGATTCTTTGGAAAATGGTCTCAACGGTGTCCGCGAGAGACAGGCAAATCTTCAAAGATCCAATTTTTTACATGGCAAGATCTTAGAGGAAGAGAACAGGGAACTCAATTTTATAATGCAACAACGTTTGGCTATGGAAGGTGCGAGAGATATAGACCATGGCTTTGATCAGAGCGTCAGGGATTTCCATTCCCAGATTCCGTTTCCCTTCCGTGTGCAGCCTATGCAGCCAAATCTTCAAGAGAGGATGTAA 1062 0.4567 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKANEITVLCDAQVSLIIFAASGKMHNYISPSTTLIDILDRYHKTSGKPLWDAKHENLSNEIDRLKKENDSMQIELRHLKGEDITSLNYKELMALEDALENGLTGVREKQMEAHRRFRRNGKILEEENRELNYLLQQHLAVEGVRDVDNGFEQSIRDFNSQMPFAFRVQPLQPNLQERMLIDILDKYHKTSGKRLWDAKHENLSNEIDRLKKENDSMQIELRHLKGEDINSLNYKELMALEDSLENGLNGVRERQANLQRSNFLHGKILEEENRELNFIMQQRLAMEGARDIDHGFDQSVRDFHSQIPFPFRVQPMQPNLQERM 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1086 353 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi08g1086 353 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi08g1086 353 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi08g1086 353 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi08g1086 353 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi08g1086 353 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Glsi08g1086 353 Pfam K-box region 82 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi08g1086 353 Pfam K-box region 227 306 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi08g1086 353 Coils Coil 222 256 - -
Glsi08g1086 353 PANTHER SERUM RESPONSE FACTOR HOMOLOG 192 323 - -
Glsi08g1086 353 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Glsi08g1086 353 ProSiteProfiles K-box domain profile. 229 315 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi08g1086 353 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Glsi08g1086 353 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi08g1086 353 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi08g1086 353 Coils Coil 77 111 - -
Glsi08g1086 353 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1086 Glsi-ChrGlsi08 7994192 8002099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1086 212 288 MADS-box Gene Family AT5G20240 68.831 4.77e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi08g1086 K-box 5.1e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1086 08 7994192 8002099 Glsi08g1086 08 7994192 8002099 ECH